myRT

myRT report for GCA_012933345.2_ASM1293334v2

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Seq: CP059756.1 Enterococcus faecium strain A10290 plasmid pA10290_P1, complete sequence (246466 bp)
Overview 1 RT 1: 25335-31803 bp Neighborhood of RT #1 [25335, 31922] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 25335-25928 bp Feature: gene Location: 25950-27644 bp Ori: QMX45091.1 Feature: domain Description: VirB4 Location: 26268-26952 bp Feature: domain Description: VirB4 Location: 26268-26952 bp Feature: gene Location: 28332-30209 bp Ori: QMX45092.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28647-29385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28647-29385 bp Feature: domain Description: HNHc Note: nucleases Location: 29943-30096 bp Feature: domain Description: HNHc Note: nucleases Location: 29943-30096 bp Feature: gene Location: 30340-30717 bp Feature: gene Location: 30717-31922 bp Ori: QMX45093.1 Feature: domain Description: Glucosaminidase Location: 30993-31389 bp Feature: domain Description: Glucosaminidase Location: 30993-31 389 bp Feature: domain Description: Peptidase_M23 Location: 31566-31803 bp Feature: domain Description: Peptidase_M23 Location: 31 566-31 803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: CP059758.1 Enterococcus faecium strain A10290 plasmid pA10290_P3, complete sequence (54357 bp)
Overview 1 RT 1: 32205-38515 bp Neighborhood of RT #1 [32205, 38544] VirB4 RVT-GII HNHc CwlT_like Spr Feature: gene Location: 32205-32672 bp Feature: gene Location: 32688-34265 bp Feature: domain Description: VirB4 Location: 33012-33624 bp Feature: domain Description: VirB4 Location: 33012 -3362 4 bp Feature: gene Location: 35001-36878 bp Ori: QMX45274.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35316-36054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35316-36054 bp Feature: domain Description: HNHc Note: nucleases Location: 36612-36765 bp Feature: domain Description: HNHc Note: nucleases Location: 36612 -36765 bp Feature: gene Location: 37012-37386 bp Feature: gene Location: 37408-38544 bp Ori: QMX45275.1 Feature: domain Description: CwlT_like Location: 37654-38131 bp Feature: domain Description: CwlT_like Location: 37654-38131 bp Feature: domain Description: Spr Location: 38155-38515 bp Feature: domain Description: Spr Location: 38155-38515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), CwlT_like, Spr (COG0791)

Seq: CP059755.1 Enterococcus faecium strain A10290 chromosome, complete genome (2783793 bp)
Overview 1 RT 1: 427301-433047 bp 2 RT 2: 2655111-2659915 bp Neighborhood of RT #1 [427301, 433070] PolY_Pol_V_umuC RVT-GII HNHc PRK05322 Neighborhood of RT #2 [2655111, 2659929] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 427301-427687 bp Feature: gene Location: 427659-428900 bp Ori: QMX44003.1 Feature: domain Description: PolY_Pol_V_umuC Location: 427689-428652 bp Feature: domain Description: PolY_Pol_V_umuC Location: 427689-428652 bp Feature: gene Location: 429071-430933 bp Ori: QMX44004.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429380-430118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4293 80-43 0118 bp Feature: domain Description: HNHc Note: nucleases Location: 430682-430802 bp Feature: domain Description: HNHc Note: nucleases Location: 43 0682-43 0802 bp Feature: gene Location: 431644-431817 bp Feature: gene Location: 431883-433070 bp Ori: QMX44005.1 Feature: domain Description: PRK05322 Location: 431895-433047 bp Feature: domain Description: PRK053 22 Location: 43 1895-43 3 047 bp Feature: gene Location: 2655111-2656295 bp Ori: QMX43532.1 Feature: domain Description: HTH_XRE Location: 2655141-2655285 bp Feature: domain Description: HTH_XRE Location: 2655141-2655285 bp Feature: domain Description: Rol_Rep_N Location: 2655318-2655582 bp Feature: domain Description: Rol_Rep_N Location: 26553 18-2655582 bp Feature: domain Description: Rep_trans Location: 2655606-2656218 bp Feature: domain Description: Rep_trans Location: 2655606-2656218 bp Feature: gene Location: 2656292-2656429 bp Ori: QMX43533.1 Feature: domain Description: DUF3789 Location: 2656319-2656412 bp Feature: domain Description: DUF3 789 Location: 26563 19-2656412 bp Feature: gene Location: 2657175-2659085 bp Ori: QMX43534.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2657508-2658246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2657508-2658246 bp Feature: domain Description: HNHc Note: nucleases Location: 2658801-2658966 bp Feature: domain Description: HNHc Note: nucleases Location: 2658801-2658966 bp Feature: gene Location: 2659189-2659413 bp Feature: gene Location: 2659426-2659929 bp Ori: QMX43535.1 Feature: domain Description: ArdA Location: 2659444-2659915 bp Feature: domain Description: ArdA Location: 2659444-2659915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII, HNHc (smart00507), PRK05322 (galactokinase; Provisional), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), ArdA (pfam07275)