myRT

myRT report for GCA_012934455.1_ASM1293445v1

Download annotations/find similar RTs

Seq: CP051738.1 Escherichia coli strain SCU-105 chromosome, complete genome (5166012 bp)
Overview 1 RT 1: 2008576-2013213 bp 2 RT 2: 3030116-3034888 bp 3 RT 3: 4076269-4080832 bp Neighborhood of RT #1 [2008576, 2013213] PRK13889 RVT-Retrons HTH_XRE Neighborhood of RT #2 [3030116, 3034950] PHA02517 RVT-GII GIIM InsE CE4_Ecf1_like_5s CE4_Ecf1_like_5s Neighborhood of RT #3 [4076269, 4080832] YhhI YhhI YhhI YhhI RVT-GII GIIM PRK09413 Feature: gene Location: 2008576-2009013 bp Feature: gene Location: 2009954-2011456 bp Ori: QJF97849.1 Feature: domain Description: PRK13889 Location: 2009957-2010536 bp Feature: domain Description: PRK1 3889 Location: 2009957-201 0536 bp Feature: gene Location: 2011533-2012633 bp Ori: QJF97850.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2011674-2012226 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 201 1 674-201 2226 bp Feature: gene Location: 2012626-2012907 bp Ori: QJF97851.1 Feature: domain Description: HTH_XRE Location: 2012641-2012806 bp Feature: domain Description: HTH_XRE Location: 201 2641 -201 2806 bp Feature: gene Location: 2012998-2013213 bp Feature: gene Location: 3030116-3030373 bp Feature: gene Location: 3030456-3030943 bp Feature: domain Description: PHA02517 Location: 3030459-3030630 bp Feature: domain Description: PHA0251 7 Location: 3030459-3030630 bp Feature: gene Location: 3031024-3032532 bp Ori: QJG00687.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3031282-3032014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3031 282-303201 4 bp Feature: domain Description: GIIM Note: maturase Location: 3032089-3032287 bp Feature: domain Description: GIIM Note: maturase Location: 3032089-3032287 bp Feature: gene Location: 3033205-3033922 bp Feature: domain Description: InsE Location: 3033244-3033493 bp Feature: domain Description: InsE Location: 3033244-3033493 bp Feature: gene Location: 3034108-3034950 bp Ori: QJG00688.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 3034207-3034603 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 3034207-3034603 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 3034609-3034888 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 3034609-3034888 bp Feature: gene Location: 4076269-4077405 bp Ori: QJF99679.1 Feature: domain Description: YhhI Location: 4076272-4076635 bp Feature: domain Description: YhhI Location: 4076272-4076635 bp Feature: domain Description: YhhI Location: 4076692-4077046 bp Feature: domain Description: YhhI Location: 4076692-4077046 bp Feature: domain Description: YhhI Location: 4077064-4077307 bp Feature: domain Description: YhhI Location: 4077064-4077307 bp Feature: gene Location: 4077581-4077775 bp Feature: domain Description: YhhI Location: 4077590-4077761 bp Feature: domain Description: YhhI Location: 4077590-4077761 bp Feature: gene Location: 4077852-4079102 bp Ori: QJF99680.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4078056-4078713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4078056-407871 3 bp Feature: domain Description: GIIM Note: maturase Location: 4078794-4079016 bp Feature: domain Description: GIIM Note: maturase Location: 4078794-407901 6 bp Feature: gene Location: 4079604-4079919 bp Ori: QJF99681.1 Feature: domain Description: PRK09413 Location: 4079607-4079919 bp Feature: domain Description: PRK0941 3 Location: 4079607-407991 9 bp Feature: gene Location: 4079919-4080832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), CE4_Ecf1_like_5s (cd10969), YhhI (COG5433), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: CP051740.1 Escherichia coli strain SCU-105 plasmid pSCU-105-2, complete sequence (9703 bp)
Overview 1 RT 1: 2303-6014 bp Neighborhood of RT #1 [2303, 6037] MPH2' Rve RVT-Retrons CspC Rop Feature: gene Location: 2303-3208 bp Ori: QJG00942.1 Gene: mph(A) Feature: domain Description: MPH2' Location: 2345-3158 bp Feature: domain Description: MPH2 ' Location: 2 345-3158 bp Feature: gene Location: 3330-4034 bp Ori: QJG00943.1 Feature: domain Description: Rve Location: 3333-3978 bp Feature: domain Description: Rve Location: 3333-3978 bp Feature: gene Location: 4090-4797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4096-4357 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4096-4357 bp Feature: gene Location: 4802-5005 bp Ori: QJG00944.1 Feature: domain Description: CspC Location: 4805-5000 bp Feature: domain Description: CspC Location: 4805-5000 bp Feature: gene Location: 5843-6037 bp Ori: QJG00945.1 Feature: domain Description: Rop Location: 5846-6014 bp Feature: domain Description: Rop Location: 5846-6014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPH2' (cd05152), Rve (COG3316), RVT-Retrons, CspC (COG1278), Rop (pfam01815)