myRT

myRT report for GCA_012934475.1_ASM1293447v1

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Seq: CP051735.1 Escherichia coli strain SCU-108 chromosome, complete genome (5050588 bp)
Overview 1 RT 1: 3328274-3334665 bp Neighborhood of RT #1 [3328274, 3334691] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 3328274-3329329 bp Ori: QJG03843.1 Feature: domain Description: YesN Location: 3328277-3328667 bp Feature: domain Description: YesN Location: 3328277-3328667 bp Feature: domain Description: YesN Location: 3329009-3329306 bp Feature: domain Description: YesN Location: 3329009-3329306 bp Feature: gene Location: 3329346-3330575 bp Ori: QJG03844.1 Feature: domain Description: YesM Location: 3329826-3330567 bp Feature: domain Description: YesM Location: 3329826-3330567 bp Feature: gene Location: 3331158-3331679 bp Ori: QJG03845.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3331164-3331446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3331 1 64-3331 446 bp Feature: domain Description: GIIM Note: maturase Location: 3331494-3331674 bp Feature: domain Description: GIIM Note: maturase Location: 3331 494-3331 674 bp Feature: gene Location: 3331855-3332246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3332185-3332245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33321 85-3332245 bp Feature: gene Location: 3332732-3333637 bp Feature: gene Location: 3333774-3334691 bp Ori: QJG03847.1 Feature: domain Description: PFLE_PFLC Location: 3333810-3334665 bp Feature: domain Description: PFLE_PFLC Location: 333381 0-3334665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: CP051736.1 Escherichia coli strain SCU-108 plasmid pSCU-108-1, complete sequence (116897 bp)
Overview 1 RT 1: 12900-17088 bp 2 RT 2: 28302-32564 bp 3 RT 3: 89876-94668 bp Neighborhood of RT #1 [12900, 17088] InsE PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [28302, 32788] rve PHA02517 RVT-GII PRK10173 Sigma70_r4_2 Sigma70_r4_2 Neighborhood of RT #3 [89876, 94769] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc AdoMet_MTases Feature: gene Location: 12900-13304 bp Ori: QJG05622.1 Feature: domain Description: InsE Location: 12930-13266 bp Feature: domain Description: InsE Location: 12 930-132 66 bp Feature: gene Location: 13333-13716 bp Feature: domain Description: PHA02517 Location: 13339-13672 bp Feature: domain Description: PHA02 517 Location: 13339-13672 bp Feature: gene Location: 13806-15314 bp Ori: QJG05719.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14064-14796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14064-14796 bp Feature: domain Description: GIIM Note: maturase Location: 14871-15069 bp Feature: domain Description: GIIM Note: maturase Location: 14871-15069 bp Feature: gene Location: 15987-16726 bp Feature: domain Description: InsE Location: 15990-16326 bp Feature: domain Description: InsE Location: 15990-1632 6 bp Feature: gene Location: 16828-17088 bp Feature: gene Location: 28302-29801 bp Ori: QJG05632.1 Feature: domain Description: rve Location: 28674-29067 bp Feature: domain Description: rve Location: 2 8674-2 9067 bp Feature: gene Location: 29881-30237 bp Feature: domain Description: PHA02517 Location: 29890-30238 bp Feature: domain Description: PHA02 517 Location: 2 9890-302 38 bp Feature: gene Location: 30910-31398 bp Ori: QJG05720.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31168-31240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31168-312 40 bp Feature: gene Location: 31548-32181 bp Feature: domain Description: PRK10173 Location: 31551-31989 bp Feature: domain Description: PRK10173 Location: 31551-31989 bp Feature: gene Location: 32303-32788 bp Ori: QJG05633.1 Feature: domain Description: Sigma70_r4_2 Location: 32363-32435 bp Feature: domain Description: Sigma70_r4_2 Location: 32 363-32 435 bp Feature: domain Description: Sigma70_r4_2 Location: 32504-32564 bp Feature: domain Description: Sigma70_r4_2 Location: 32 504-32 564 bp Feature: gene Location: 89876-90109 bp Ori: QJG05695.1 Feature: domain Description: DUF905 Location: 89906-90104 bp Feature: domain Description: DUF905 Location: 89906-90104 bp Feature: gene Location: 90166-90651 bp Ori: QJG05727.1 Gene: ssb Feature: domain Description: PRK13732 Location: 90169-90649 bp Feature: domain Description: PRK13732 Location: 90169-90649 bp Feature: gene Location: 90801-92702 bp Ori: QJG05696.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91068-91899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91068-91899 bp Feature: domain Description: Intron_maturas2 Location: 92013-92271 bp Feature: domain Description: Intron_maturas2 Location: 92 013-92 2 71 bp Feature: domain Description: HNHc Note: nucleases Location: 92445-92607 bp Feature: domain Description: HNHc Note: nucleases Location: 92 445-92 607 bp Feature: gene Location: 93656-94120 bp Feature: gene Location: 94206-94769 bp Ori: QJG05698.1 Feature: domain Description: AdoMet_MTases Location: 94368-94668 bp Feature: domain Description: AdoMet_MTases Location: 94368-94668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), rve (pfam00665), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), Sigma70_r4_2 (pfam08281), DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348)
HNHc (smart00507), AdoMet_MTases (cl17173)