myRT

myRT report for GCA_012934495.1_ASM1293449v1

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Seq: CP051733.1 Escherichia coli strain SCU-109 chromosome, complete genome (5033898 bp)
Overview 1 RT 1: 939122-945016 bp 2 RT 2: 2848357-2852986 bp Neighborhood of RT #1 [939122, 945153] Phage_ASH RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #2 [2848357, 2853000] DcuC RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 939122-939592 bp Feature: gene Location: 939638-939778 bp Ori: QJG06618.1 Feature: domain Description: Phage_ASH Location: 939665-939758 bp Feature: domain Description: Phage_ASH Location: 939665-939758 bp Feature: gene Location: 939939-943148 bp Ori: QJG06619.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 940467-940956 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 940467-940956 bp Feature: domain Description: nitrilase Location: 942462-943059 bp Feature: domain Description: nitrilase Location: 942462-943059 bp Feature: gene Location: 943443-944246 bp Ori: QJG06620.1 Feature: domain Description: AbiEi_3_N Location: 943476-943737 bp Feature: domain Description: AbiEi_3_N Location: 943476-943737 bp Feature: domain Description: AbiEi_3 Location: 943749-944205 bp Feature: domain Description: AbiEi_3 Location: 943749-944205 bp Feature: gene Location: 944233-945153 bp Ori: QJG06621.1 Feature: domain Description: AbiEii Location: 944275-945016 bp Feature: domain Description: AbiEii Location: 944275-94501 6 bp Feature: gene Location: 2848357-2849718 bp Ori: QJG08281.1 Gene: dcuC Feature: domain Description: DcuC Location: 2848360-2849692 bp Feature: domain Description: DcuC Location: 2848360-2849692 bp Feature: gene Location: 2849771-2849899 bp Feature: gene Location: 2850383-2850829 bp Ori: QJG08282.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2850689-2850791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2850689-2850791 bp Feature: gene Location: 2851353-2852384 bp Ori: QJG08283.1 Feature: domain Description: Asparaginase_2 Location: 2851443-2852376 bp Feature: domain Description: Asparaginase_2 Location: 2851 443-2852376 bp Feature: gene Location: 2852722-2853000 bp Ori: QJG08284.1 Feature: domain Description: DUF5339 Location: 2852785-2852986 bp Feature: domain Description: DUF5339 Location: 2852785-2852986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_ASH (pfam10554), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274)

Seq: CP051734.1 Escherichia coli strain SCU-109 plasmid pSCU-109-1, complete sequence (110400 bp)
Overview 1 RT 1: 12905-17062 bp 2 RT 2: 26706-30134 bp Neighborhood of RT #1 [12905, 17062] InsE PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [26706, 30358] InsE RVT-GII PRK10173 Sigma70_r4_2 Sigma70_r4_2 Feature: gene Location: 12905-13309 bp Ori: QJG10353.1 Feature: domain Description: InsE Location: 12935-13271 bp Feature: domain Description: InsE Location: 12 935-132 71 bp Feature: gene Location: 13338-13721 bp Feature: domain Description: PHA02517 Location: 13344-13677 bp Feature: domain Description: PHA02 517 Location: 13344-13677 bp Feature: gene Location: 13811-15319 bp Ori: QJG10446.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14069-14801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14069-14801 bp Feature: domain Description: GIIM Note: maturase Location: 14876-15074 bp Feature: domain Description: GIIM Note: maturase Location: 14876-15074 bp Feature: gene Location: 15992-16731 bp Feature: domain Description: InsE Location: 15995-16331 bp Feature: domain Description: InsE Location: 15995-16331 bp Feature: gene Location: 16757-17062 bp Feature: gene Location: 26706-26966 bp Feature: gene Location: 27068-27807 bp Feature: domain Description: InsE Location: 27071-27407 bp Feature: domain Description: InsE Location: 2 7071-2 7407 bp Feature: gene Location: 28480-28968 bp Ori: QJG10447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28738-28807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8738-2 8807 bp Feature: gene Location: 29118-29751 bp Feature: domain Description: PRK10173 Location: 29121-29559 bp Feature: domain Description: PRK10173 Location: 2 912 1-2 9559 bp Feature: gene Location: 29873-30358 bp Ori: QJG10362.1 Feature: domain Description: Sigma70_r4_2 Location: 29933-30005 bp Feature: domain Description: Sigma70_r4_2 Location: 2 9933-30005 bp Feature: domain Description: Sigma70_r4_2 Location: 30074-30134 bp Feature: domain Description: Sigma70_r4_2 Location: 30074-30134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), Sigma70_r4_2 (pfam08281)