myRT

myRT report for GCA_012934615.1_ASM1293461v1

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Seq: CP051713.1 Escherichia coli strain SCU-123 plasmid pSCU-123-2, complete sequence (94616 bp)
Overview 1 RT 1: 14245-19101 bp Neighborhood of RT #1 [14245, 19106] DUF1380 RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 14245-14667 bp Ori: QJG38018.1 Feature: domain Description: DUF1380 Location: 14248-14545 bp Feature: domain Description: DUF1 380 Location: 1 4248-1 4545 bp Feature: gene Location: 14664-14855 bp Feature: gene Location: 16279-18180 bp Ori: QJG38020.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16546-17377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6546-1 7377 bp Feature: domain Description: Intron_maturas2 Location: 17491-17749 bp Feature: domain Description: Intron_maturas2 Location: 1 7491 -1 7749 bp Feature: domain Description: HNHc Note: nucleases Location: 17923-18085 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7923-1 8085 bp Feature: gene Location: 18330-18815 bp Ori: QJG38093.1 Feature: domain Description: PRK13732 Location: 18333-18813 bp Feature: domain Description: PRK1 3732 Location: 1 8333-1 881 3 bp Feature: gene Location: 18873-19106 bp Ori: QJG38021.1 Feature: domain Description: DUF905 Location: 18903-19101 bp Feature: domain Description: DUF905 Location: 1 8903-1 91 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP051712.1 Escherichia coli strain SCU-123 plasmid pSCU-123-1, complete sequence (116892 bp)
Overview 1 RT 1: 12900-17088 bp 2 RT 2: 28302-32564 bp 3 RT 3: 89876-94662 bp Neighborhood of RT #1 [12900, 17088] InsE PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [28302, 32788] rve PHA02517 RVT-GII PRK10173 Sigma70_r4_2 Sigma70_r4_2 Neighborhood of RT #3 [89876, 94763] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc AdoMet_MTases Feature: gene Location: 12900-13304 bp Ori: QJG37889.1 Feature: domain Description: InsE Location: 12930-13266 bp Feature: domain Description: InsE Location: 12 930-132 66 bp Feature: gene Location: 13333-13716 bp Feature: domain Description: PHA02517 Location: 13339-13672 bp Feature: domain Description: PHA02 517 Location: 13339-13672 bp Feature: gene Location: 13806-15314 bp Ori: QJG37987.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14064-14796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14064-14796 bp Feature: domain Description: GIIM Note: maturase Location: 14871-15069 bp Feature: domain Description: GIIM Note: maturase Location: 14871-15069 bp Feature: gene Location: 15987-16726 bp Feature: domain Description: InsE Location: 15990-16326 bp Feature: domain Description: InsE Location: 15990-1632 6 bp Feature: gene Location: 16828-17088 bp Feature: gene Location: 28302-29801 bp Ori: QJG37899.1 Feature: domain Description: rve Location: 28674-29067 bp Feature: domain Description: rve Location: 2 8674-2 9067 bp Feature: gene Location: 29881-30237 bp Feature: domain Description: PHA02517 Location: 29890-30238 bp Feature: domain Description: PHA02 517 Location: 2 9890-302 38 bp Feature: gene Location: 30910-31398 bp Ori: QJG37988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31168-31240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31168-312 40 bp Feature: gene Location: 31548-32181 bp Feature: domain Description: PRK10173 Location: 31551-31989 bp Feature: domain Description: PRK10173 Location: 31551-31989 bp Feature: gene Location: 32303-32788 bp Ori: QJG37900.1 Feature: domain Description: Sigma70_r4_2 Location: 32363-32435 bp Feature: domain Description: Sigma70_r4_2 Location: 32 363-32 435 bp Feature: domain Description: Sigma70_r4_2 Location: 32504-32564 bp Feature: domain Description: Sigma70_r4_2 Location: 32 504-32 564 bp Feature: gene Location: 89876-90109 bp Ori: QJG37961.1 Feature: domain Description: DUF905 Location: 89906-90104 bp Feature: domain Description: DUF905 Location: 89906-90104 bp Feature: gene Location: 90166-90651 bp Ori: QJG37995.1 Gene: ssb Feature: domain Description: PRK13732 Location: 90169-90649 bp Feature: domain Description: PRK13732 Location: 90169-90649 bp Feature: gene Location: 90801-92702 bp Ori: QJG37962.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91068-91899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91068-91899 bp Feature: domain Description: Intron_maturas2 Location: 92013-92271 bp Feature: domain Description: Intron_maturas2 Location: 92 013-92 2 71 bp Feature: domain Description: HNHc Note: nucleases Location: 92445-92607 bp Feature: domain Description: HNHc Note: nucleases Location: 92 445-92 607 bp Feature: gene Location: 93656-94114 bp Feature: gene Location: 94200-94763 bp Ori: QJG37964.1 Feature: domain Description: AdoMet_MTases Location: 94362-94662 bp Feature: domain Description: AdoMet_MTases Location: 94362 -94662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), rve (pfam00665), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), Sigma70_r4_2 (pfam08281), DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348)
HNHc (smart00507), AdoMet_MTases (cl17173)

Seq: CP051711.1 Escherichia coli strain SCU-123 chromosome, complete genome (5048496 bp)
Overview 1 RT 1: 3328330-3334721 bp Neighborhood of RT #1 [3328330, 3334747] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 3328330-3329385 bp Ori: QJG36113.1 Feature: domain Description: YesN Location: 3328333-3328723 bp Feature: domain Description: YesN Location: 3 3 283 3 3 -3 3 28723 bp Feature: domain Description: YesN Location: 3329065-3329362 bp Feature: domain Description: YesN Location: 3 3 29065-3 3 293 62 bp Feature: gene Location: 3329402-3330631 bp Ori: QJG36114.1 Feature: domain Description: YesM Location: 3329882-3330623 bp Feature: domain Description: YesM Location: 3 3 29882-3 3 3 0623 bp Feature: gene Location: 3331214-3331735 bp Ori: QJG36115.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3331220-3331502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 3 1220-3 3 3 1502 bp Feature: domain Description: GIIM Note: maturase Location: 3331550-3331730 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 3 1550-3 3 3 173 0 bp Feature: gene Location: 3331911-3332302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3332241-3332301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 3 2241-3 3 3 23 01 bp Feature: gene Location: 3332788-3333693 bp Feature: gene Location: 3333830-3334747 bp Ori: QJG36117.1 Feature: domain Description: PFLE_PFLC Location: 3333866-3334721 bp Feature: domain Description: PFLE_PFLC Location: 3 3 3 3 866-3 3 3 4721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)