myRT

myRT report for GCA_012934655.2_ASM1293465v2

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Seq: CP051701.1 Escherichia coli strain SCU-125 plasmid pSCU-125-1, complete sequence (120617 bp)
Overview 1 RT 1: 15430-19618 bp 2 RT 2: 30832-36030 bp Neighborhood of RT #1 [15430, 19618] InsE PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [30832, 36083] rve PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 15430-15834 bp Ori: QJG47279.1 Feature: domain Description: InsE Location: 15460-15796 bp Feature: domain Description: InsE Location: 1 5460-1 5796 bp Feature: gene Location: 15863-16246 bp Feature: domain Description: PHA02517 Location: 15869-16202 bp Feature: domain Description: PHA0251 7 Location: 1 5869-1 6202 bp Feature: gene Location: 16336-17844 bp Ori: QJG47380.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16594-17326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6594-1 7326 bp Feature: domain Description: GIIM Note: maturase Location: 17401-17599 bp Feature: domain Description: GIIM Note: maturase Location: 1 7401 -1 7599 bp Feature: gene Location: 18517-19256 bp Feature: domain Description: InsE Location: 18520-18856 bp Feature: domain Description: InsE Location: 1 8520-1 8856 bp Feature: gene Location: 19358-19618 bp Feature: gene Location: 30832-32331 bp Ori: QJG47289.1 Feature: domain Description: rve Location: 31204-31597 bp Feature: domain Description: rve Location: 31 204-31 597 bp Feature: gene Location: 32417-32767 bp Feature: domain Description: PHA02517 Location: 32420-32768 bp Feature: domain Description: PHA0251 7 Location: 32420-32768 bp Feature: gene Location: 33440-34948 bp Ori: QJG47381.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33698-34430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33698-34430 bp Feature: domain Description: GIIM Note: maturase Location: 34505-34703 bp Feature: domain Description: GIIM Note: maturase Location: 34505-34703 bp Feature: gene Location: 35038-35511 bp Feature: domain Description: PHA02517 Location: 35044-35509 bp Feature: domain Description: PHA0251 7 Location: 35044-35509 bp Feature: gene Location: 35514-36083 bp Ori: QJG47290.1 Feature: domain Description: autotrans_barl Location: 35595-36030 bp Feature: domain Description: autotrans_barl Location: 35595-36030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), rve (pfam00665), autotrans_barl (TIGR01414)

Seq: CP051700.1 Escherichia coli strain SCU-125 chromosome, complete genome (5053537 bp)
Overview 1 RT 1: 2426481-2431086 bp 2 RT 2: 2437368-2442203 bp 3 RT 3: 2702081-2705772 bp Neighborhood of RT #1 [2426481, 2431086] LacI PBP1_GntR RVT-GII GIIM RVT-GII Neighborhood of RT #2 [2437368, 2442214] COG3440 PHA02517 RVT-GII GIIM PHA02517 Tra8 Neighborhood of RT #3 [2702081, 2705780] PHA02517 PHA02517 RVT-GII GIIM PHA02517 EmrE Feature: gene Location: 2426481-2427512 bp Ori: QJG44772.1 Feature: domain Description: LacI Location: 2426523-2426658 bp Feature: domain Description: LacI Location: 2 42 652 3-2 42 6658 bp Feature: domain Description: PBP1_GntR Location: 2426697-2427507 bp Feature: domain Description: PBP1_GntR Location: 2 42 6697-2 42 7507 bp Feature: gene Location: 2427640-2427963 bp Feature: gene Location: 2428039-2428845 bp Ori: QJG47176.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2428042-2428405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 8042 -2 42 8405 bp Feature: domain Description: GIIM Note: maturase Location: 2428453-2428678 bp Feature: domain Description: GIIM Note: maturase Location: 2 42 8453-2 42 8678 bp Feature: gene Location: 2428863-2429297 bp Ori: QJG47177.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2429055-2429271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 9055-2 42 92 71 bp Feature: gene Location: 2430206-2430532 bp Feature: gene Location: 2430742-2431086 bp Feature: gene Location: 2437368-2438204 bp Ori: QJG44779.1 Feature: domain Description: COG3440 Location: 2437380-2438193 bp Feature: domain Description: COG3440 Location: 2 437380-2 438193 bp Feature: gene Location: 2438238-2438726 bp Feature: domain Description: PHA02517 Location: 2438241-2438715 bp Feature: domain Description: PHA02 517 Location: 2 4382 41-2 438715 bp Feature: gene Location: 2438807-2440315 bp Ori: QJG47178.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2439065-2439797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 439065-2 439797 bp Feature: domain Description: GIIM Note: maturase Location: 2439872-2440070 bp Feature: domain Description: GIIM Note: maturase Location: 2 439872 -2 440070 bp Feature: gene Location: 2440988-2441413 bp Feature: domain Description: PHA02517 Location: 2441078-2441414 bp Feature: domain Description: PHA02 517 Location: 2 441078-2 441414 bp Feature: gene Location: 2441423-2442214 bp Feature: domain Description: Tra8 Location: 2441435-2442203 bp Feature: domain Description: Tra8 Location: 2 441435-2 442 2 03 bp Feature: gene Location: 2702081-2702248 bp Ori: QJG42595.1 Feature: domain Description: PHA02517 Location: 2702141-2702234 bp Feature: domain Description: PHA02 517 Location: 2 702 141-2 702 2 34 bp Feature: gene Location: 2702268-2702549 bp Ori: QJG42596.1 Feature: domain Description: PHA02517 Location: 2702271-2702484 bp Feature: domain Description: PHA02 517 Location: 2 702 2 71-2 702 484 bp Feature: gene Location: 2703156-2704664 bp Ori: QJG47190.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2703414-2704146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 703414-2 704146 bp Feature: domain Description: GIIM Note: maturase Location: 2704221-2704419 bp Feature: domain Description: GIIM Note: maturase Location: 2 7042 2 1-2 704419 bp Feature: gene Location: 2704754-2705227 bp Feature: domain Description: PHA02517 Location: 2704760-2705225 bp Feature: domain Description: PHA02 517 Location: 2 704760-2 7052 2 5 bp Feature: gene Location: 2705451-2705780 bp Ori: QJG44999.1 Feature: domain Description: EmrE Location: 2705469-2705772 bp Feature: domain Description: EmrE Location: 2 705469-2 705772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388), COG3440 (Predicted restriction endonuclease ), PHA02517 (putative transposase OrfB; Reviewed), Tra8 (COG2826), EmrE (pfam13536)