myRT

myRT report for GCA_012934815.1_ASM1293481v1

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Seq: CP051749.1 Escherichia coli strain SCU-486 chromosome, complete genome (5198439 bp)
Overview 1 RT 1: 1118328-1122702 bp 2 RT 2: 1145020-1151481 bp 3 RT 3: 2001520-2006149 bp 4 RT 4: 2014734-2017953 bp Neighborhood of RT #1 [1118328, 1122702] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [1145020, 1151504] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Neighborhood of RT #3 [2001520, 2006166] TnpB_IS66 InsE RVT-GII GIIM PHA02517 FadR Neighborhood of RT #4 [2014734, 2017953] DUF5339 Asparaginase_2 RVT-GII group_II_RT_mat Feature: gene Location: 1118328-1118678 bp Ori: QJF87742.1 Feature: domain Description: InsE Location: 1118337-1118625 bp Feature: domain Description: InsE Location: 1 1 1 8337-1 1 1 8625 bp Feature: gene Location: 1118783-1119262 bp Feature: domain Description: PHA02517 Location: 1118786-1119260 bp Feature: domain Description: PHA0251 7 Location: 1 1 1 8786-1 1 1 9260 bp Feature: gene Location: 1119346-1120854 bp Ori: QJF91132.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119604-1120336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 9604-1 1 20336 bp Feature: domain Description: GIIM Note: maturase Location: 1120411-1120609 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 2041 1 -1 1 20609 bp Feature: gene Location: 1121527-1121910 bp Feature: domain Description: PHA02517 Location: 1121557-1121911 bp Feature: domain Description: PHA0251 7 Location: 1 1 21 557-1 1 21 91 1 bp Feature: gene Location: 1121911-1122702 bp Feature: gene Location: 1145020-1145937 bp Ori: QJF87760.1 Feature: domain Description: PFLE_PFLC Location: 1145056-1145911 bp Feature: domain Description: PFLE_PFLC Location: 1 1 45056-1 1 4591 1 bp Feature: gene Location: 1146075-1146980 bp Feature: gene Location: 1147466-1147857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1147796-1147856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 47796-1 1 47856 bp Feature: gene Location: 1148033-1148554 bp Ori: QJF87762.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1148039-1148321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 48039-1 1 48321 bp Feature: domain Description: GIIM Note: maturase Location: 1148369-1148549 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 48369-1 1 48549 bp Feature: gene Location: 1149203-1150432 bp Ori: QJF87763.1 Feature: domain Description: YesM Location: 1149683-1150424 bp Feature: domain Description: YesM Location: 1 1 49683-1 1 50424 bp Feature: gene Location: 1150449-1151504 bp Ori: QJF87764.1 Feature: domain Description: YesN Location: 1150452-1150851 bp Feature: domain Description: YesN Location: 1 1 50452-1 1 50851 bp Feature: domain Description: YesN Location: 1151184-1151481 bp Feature: domain Description: YesN Location: 1 1 51 1 84-1 1 51 481 bp Feature: gene Location: 2001520-2001818 bp Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 2001547-2001745 bp Feature: domain Description: TnpB_IS66 Location: 2001 547-2001 745 bp Feature: gene Location: 2002329-2003062 bp Feature: domain Description: InsE Location: 2002368-2002662 bp Feature: domain Description: InsE Location: 2002368-2002662 bp Feature: gene Location: 2003735-2005243 bp Ori: QJF91163.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2003993-2004725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2003993-2004725 bp Feature: domain Description: GIIM Note: maturase Location: 2004800-2004998 bp Feature: domain Description: GIIM Note: maturase Location: 2004800-2004998 bp Feature: gene Location: 2005324-2005812 bp Feature: domain Description: PHA02517 Location: 2005327-2005783 bp Feature: domain Description: PHA0251 7 Location: 2005327-2005783 bp Feature: gene Location: 2006032-2006166 bp Ori: QJF88485.1 Feature: domain Description: FadR Location: 2006047-2006149 bp Feature: domain Description: FadR Location: 2006047-20061 49 bp Feature: gene Location: 2014734-2015012 bp Ori: QJF88489.1 Feature: domain Description: DUF5339 Location: 2014797-2014998 bp Feature: domain Description: DUF5339 Location: 201 4797-201 4998 bp Feature: gene Location: 2015350-2016381 bp Ori: QJF88490.1 Feature: domain Description: Asparaginase_2 Location: 2015440-2016373 bp Feature: domain Description: Asparaginase_2 Location: 201 5440-201 6373 bp Feature: gene Location: 2016797-2016961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2016800-2016956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 6800-201 6956 bp Feature: gene Location: 2016980-2017360 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2017142-2017313 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 201 71 42-201 731 3 bp Feature: gene Location: 2017726-2017953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494), YesM (COG2972), YesN (COG4753), TnpB_IS66 (pfam05717), FadR (COG2186), DUF5339 (pfam17274)
Asparaginase_2 (pfam01112), group_II_RT_mat (TIGR04416)