myRT

myRT report for GCA_012935675.1_ASM1293567v1

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Seq: CP052861.1 Pseudomonas sp. ADAK7 chromosome, complete genome (7105297 bp)
Overview 1 RT 1: 1961113-1967417 bp 2 RT 2: 4102117-4108403 bp 3 RT 3: 4247959-4253782 bp 4 RT 4: 5762907-5774221 bp Neighborhood of RT #1 [1961113, 1967443] TAS_TAS_TAS_TIGR02293 RVT-UG12 DEXQc_UvrD DEXQc_UvrD UvrD Neighborhood of RT #2 [4102117, 4108777] Integrase_1 RVT-Retrons ABC_ATPase PRK12767 Neighborhood of RT #3 [4247959, 4253782] MvaT_DBD RVT-UG8 RVT-UG3 Neighborhood of RT #4 [5762907, 5775114] AAA_23 SbcC ABC_ATPase RVT-Retrons SMC_prok_A PRK07078 DUF927 Feature: gene Location: 1961113-1961943 bp Feature: gene Location: 1962185-1962304 bp Ori: QJI41059.1 Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 1962188-1962299 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 1 9621 88-1 962299 bp Feature: gene Location: 1962486-1964192 bp Ori: QJI41060.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1962825-1963278 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 962825-1 963278 bp Feature: gene Location: 1964831-1965430 bp Feature: gene Location: 1966046-1967443 bp Ori: QJI41062.1 Feature: domain Description: DEXQc_UvrD Location: 1966088-1966268 bp Feature: domain Description: DEXQc_UvrD Location: 1 966088-1 966268 bp Feature: domain Description: DEXQc_UvrD Location: 1966340-1966553 bp Feature: domain Description: DEXQc_UvrD Location: 1 966340-1 966553 bp Feature: domain Description: UvrD Location: 1967258-1967417 bp Feature: domain Description: UvrD Location: 1 967258-1 96741 7 bp Feature: gene Location: 4102117-4102392 bp Feature: gene Location: 4102682-4103650 bp Ori: QJI42914.1 Feature: domain Description: Integrase_1 Location: 4103066-4103504 bp Feature: domain Description: Integrase_1 Location: 41 03066-41 03504 bp Feature: gene Location: 4104520-4105491 bp Ori: QJI42915.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4104646-4105192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 04646-41 051 92 bp Feature: gene Location: 4105494-4106846 bp Ori: QJI42916.1 Feature: domain Description: ABC_ATPase Location: 4105548-4106247 bp Feature: domain Description: ABC_ATPase Location: 41 05548-41 06247 bp Feature: gene Location: 4107536-4108777 bp Ori: QJI42917.1 Feature: domain Description: PRK12767 Location: 4107860-4108403 bp Feature: domain Description: PRK1 2767 Location: 41 07860-41 08403 bp Feature: gene Location: 4247959-4248147 bp Feature: gene Location: 4248217-4248582 bp Ori: QJI43044.1 Feature: domain Description: MvaT_DBD Location: 4248454-4248574 bp Feature: domain Description: MvaT_DBD Location: 4248454-4248574 bp Feature: gene Location: 4249024-4251009 bp Ori: QJI43045.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4249543-4249981 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4249543-4249981 bp Feature: gene Location: 4251002-4252225 bp Ori: QJI43046.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4251290-4251764 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4251 290-4251 764 bp Feature: gene Location: 4252880-4253500 bp Feature: gene Location: 4253543-4253782 bp Feature: gene Location: 5762907-5763497 bp Feature: gene Location: 5764388-5768395 bp Ori: QJI44375.1 Feature: domain Description: AAA_23 Location: 5764766-5764916 bp Feature: domain Description: AAA_23 Location: 5764766-576491 6 bp Feature: domain Description: SbcC Location: 5765285-5765906 bp Feature: domain Description: SbcC Location: 5765285-5765906 bp Feature: domain Description: ABC_ATPase Location: 5766842-5767019 bp Feature: domain Description: ABC_ATPase Location: 5766842-576701 9 bp Feature: gene Location: 5769083-5770816 bp Ori: QJI44376.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5769212-5769836 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 576921 2-5769836 bp Feature: gene Location: 5771285-5772142 bp Ori: QJI44377.1 Feature: domain Description: SMC_prok_A Location: 5771291-5771978 bp Feature: domain Description: SMC_prok_A Location: 5771 291 -5771 978 bp Feature: gene Location: 5772232-5775114 bp Ori: QJI44378.1 Feature: domain Description: PRK07078 Location: 5772265-5773243 bp Feature: domain Description: PRK07078 Location: 5772265-5773243 bp Feature: domain Description: DUF927 Location: 5773384-5774221 bp Feature: domain Description: DUF927 Location: 5773384-5774221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TAS_TAS_TAS_TIGR02293, RVT-UG12, DEXQc_UvrD (cd17932), UvrD (COG0210), Integrase_1 (pfam12835), RVT-Retrons, ABC_ATPase (pfam09818), PRK12767 (carbamoyl phosphate synthase-like protein; Provisional), MvaT_DBD (cl40688), RVT-UG8
RVT-UG3, AAA_23 (pfam13476), SbcC (COG0419), SMC_prok_A (TIGR02169), PRK07078 (hypothetical protein; Validated), DUF927 (pfam06048)