myRT

myRT report for GCA_012935755.1_ASM1293575v1

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Seq: CP052862.1 Pseudomonas sp. ADAK2 chromosome, complete genome (7105260 bp)
Overview 1 RT 1: 1961112-1967416 bp 2 RT 2: 4102115-4108401 bp 3 RT 3: 4247957-4253780 bp 4 RT 4: 5762869-5774183 bp Neighborhood of RT #1 [1961112, 1967442] TAS_TAS_TAS_TIGR02293 RVT-UG12 DEXQc_UvrD DEXQc_UvrD UvrD Neighborhood of RT #2 [4102115, 4108775] Integrase_1 RVT-Retrons ABC_ATPase PRK12767 Neighborhood of RT #3 [4247957, 4253780] MvaT_DBD RVT-UG8 RVT-UG3 Neighborhood of RT #4 [5762869, 5775076] AAA_23 SbcC ABC_ATPase RVT-Retrons SMC_prok_A PRK07078 DUF927 Feature: gene Location: 1961112-1961942 bp Feature: gene Location: 1962184-1962303 bp Ori: QJI47364.1 Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 1962187-1962298 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 1 9621 87-1 962298 bp Feature: gene Location: 1962485-1964191 bp Ori: QJI47365.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1962824-1963277 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 962824-1 963277 bp Feature: gene Location: 1964830-1965429 bp Feature: gene Location: 1966045-1967442 bp Ori: QJI47367.1 Feature: domain Description: DEXQc_UvrD Location: 1966087-1966267 bp Feature: domain Description: DEXQc_UvrD Location: 1 966087-1 966267 bp Feature: domain Description: DEXQc_UvrD Location: 1966339-1966552 bp Feature: domain Description: DEXQc_UvrD Location: 1 966339-1 966552 bp Feature: domain Description: UvrD Location: 1967257-1967416 bp Feature: domain Description: UvrD Location: 1 967257-1 96741 6 bp Feature: gene Location: 4102115-4102390 bp Feature: gene Location: 4102680-4103648 bp Ori: QJI49217.1 Feature: domain Description: Integrase_1 Location: 4103064-4103502 bp Feature: domain Description: Integrase_1 Location: 41 03064-41 03502 bp Feature: gene Location: 4104518-4105489 bp Ori: QJI49218.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4104644-4105190 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 04644-41 051 90 bp Feature: gene Location: 4105492-4106844 bp Ori: QJI49219.1 Feature: domain Description: ABC_ATPase Location: 4105546-4106245 bp Feature: domain Description: ABC_ATPase Location: 41 05546-41 06245 bp Feature: gene Location: 4107534-4108775 bp Ori: QJI49220.1 Feature: domain Description: PRK12767 Location: 4107858-4108401 bp Feature: domain Description: PRK1 2767 Location: 41 07858-41 08401 bp Feature: gene Location: 4247957-4248145 bp Feature: gene Location: 4248215-4248580 bp Ori: QJI49347.1 Feature: domain Description: MvaT_DBD Location: 4248452-4248572 bp Feature: domain Description: MvaT_DBD Location: 4248452-4248572 bp Feature: gene Location: 4249022-4251007 bp Ori: QJI49348.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4249541-4249979 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4249541 -4249979 bp Feature: gene Location: 4251000-4252223 bp Ori: QJI49349.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4251288-4251762 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4251 288-4251 762 bp Feature: gene Location: 4252878-4253498 bp Feature: gene Location: 4253541-4253780 bp Feature: gene Location: 5762869-5763459 bp Feature: gene Location: 5764350-5768357 bp Ori: QJI50676.1 Feature: domain Description: AAA_23 Location: 5764728-5764878 bp Feature: domain Description: AAA_23 Location: 5764728-5764878 bp Feature: domain Description: SbcC Location: 5765247-5765868 bp Feature: domain Description: SbcC Location: 5765247-5765868 bp Feature: domain Description: ABC_ATPase Location: 5766804-5766981 bp Feature: domain Description: ABC_ATPase Location: 5766804-5766981 bp Feature: gene Location: 5769045-5770778 bp Ori: QJI50677.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5769174-5769798 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57691 74-5769798 bp Feature: gene Location: 5771247-5772104 bp Ori: QJI50678.1 Feature: domain Description: SMC_prok_A Location: 5771253-5771940 bp Feature: domain Description: SMC_prok_A Location: 5771 253-5771 940 bp Feature: gene Location: 5772194-5775076 bp Ori: QJI50679.1 Feature: domain Description: PRK07078 Location: 5772227-5773205 bp Feature: domain Description: PRK07078 Location: 5772227-5773205 bp Feature: domain Description: DUF927 Location: 5773346-5774183 bp Feature: domain Description: DUF927 Location: 5773346-57741 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TAS_TAS_TAS_TIGR02293, RVT-UG12, DEXQc_UvrD (cd17932), UvrD (COG0210), Integrase_1 (pfam12835), RVT-Retrons, ABC_ATPase (pfam09818), PRK12767 (carbamoyl phosphate synthase-like protein; Provisional), MvaT_DBD (cl40688), RVT-UG8
RVT-UG3, AAA_23 (pfam13476), SbcC (COG0419), SMC_prok_A (TIGR02169), PRK07078 (hypothetical protein; Validated), DUF927 (pfam06048)