myRT

myRT report for GCA_012974865.1_ASM1297486v1

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Seq: CP043633.1 Nonlabens sp. Ci31 chromosome, complete genome (3740082 bp)
Overview 1 RT 1: 1286570-1291075 bp 2 RT 2: 3159078-3163886 bp 3 RT 3: 3171321-3178069 bp 4 RT 4: 3212144-3217833 bp Neighborhood of RT #1 [1286570, 1291119] antidote_HigA HigB RVT-GII GIIM PIN_8 HTH_XRE Neighborhood of RT #2 [3159078, 3163886] RVT-GII GIIM Neighborhood of RT #3 [3171321, 3178069] HTH_28 Tra5 AmpC DUF3471 DUF3471 RVT-GII Neighborhood of RT #4 [3212144, 3217886] HigB_toxin HigA RVT-GII GIIM HTH_Tnp_1 Feature: gene Location: 1286570-1286872 bp Ori: QJP33936.1 Feature: domain Description: antidote_HigA Location: 1286588-1286807 bp Feature: domain Description: antidote_HigA Location: 1 286588-1 286807 bp Feature: gene Location: 1286884-1287165 bp Ori: QJP33937.1 Feature: domain Description: HigB Location: 1286887-1287163 bp Feature: domain Description: HigB Location: 1 286887-1 2871 63 bp Feature: gene Location: 1287932-1289212 bp Ori: QJP33938.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1288127-1288742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2881 27-1 288742 bp Feature: domain Description: GIIM Note: maturase Location: 1288817-1289027 bp Feature: domain Description: GIIM Note: maturase Location: 1 28881 7-1 289027 bp Feature: gene Location: 1289305-1290579 bp Ori: QJP33939.1 Feature: domain Description: PIN_8 Location: 1289377-1290106 bp Feature: domain Description: PIN_8 Location: 1 289377-1 2901 06 bp Feature: gene Location: 1290817-1291119 bp Ori: QJP33940.1 Feature: domain Description: HTH_XRE Location: 1290937-1291075 bp Feature: domain Description: HTH_XRE Location: 1 290937-1 291 075 bp Feature: gene Location: 3159078-3159596 bp Feature: gene Location: 3159754-3160614 bp Feature: gene Location: 3160704-3161984 bp Ori: QJP35405.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3160899-3161514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 60899-31 61 51 4 bp Feature: domain Description: GIIM Note: maturase Location: 3161589-3161799 bp Feature: domain Description: GIIM Note: maturase Location: 31 61 589-31 61 799 bp Feature: gene Location: 3162650-3163186 bp Feature: gene Location: 3163350-3163886 bp Feature: gene Location: 3171321-3172502 bp Ori: QJP35416.1 Feature: domain Description: HTH_28 Location: 3171354-3171507 bp Feature: domain Description: HTH_28 Location: 31 71 354-31 71 507 bp Feature: domain Description: Tra5 Location: 3171651-3172218 bp Feature: domain Description: Tra5 Location: 31 71 651 -31 7221 8 bp Feature: gene Location: 3173250-3174902 bp Ori: QJP35417.1 Feature: domain Description: AmpC Location: 3173328-3174297 bp Feature: domain Description: AmpC Location: 31 73328-31 74297 bp Feature: domain Description: DUF3471 Location: 3174369-3174558 bp Feature: domain Description: DUF3471 Location: 31 74369-31 74558 bp Feature: domain Description: DUF3471 Location: 3174633-3174897 bp Feature: domain Description: DUF3471 Location: 31 74633-31 74897 bp Feature: gene Location: 3174992-3176274 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3175187-3175802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 751 87-31 75802 bp Feature: gene Location: 3176905-3177408 bp Feature: gene Location: 3177815-3178069 bp Feature: gene Location: 3212144-3212440 bp Ori: QJP35452.1 Feature: domain Description: HigB_toxin Location: 3212207-3212423 bp Feature: domain Description: HigB_toxin Location: 321 2207-321 2423 bp Feature: gene Location: 3212451-3212819 bp Ori: QJP35453.1 Feature: domain Description: HigA Location: 3212457-3212799 bp Feature: domain Description: HigA Location: 321 2457-321 2799 bp Feature: gene Location: 3212948-3214209 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3213143-3213758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 31 43-321 3758 bp Feature: domain Description: GIIM Note: maturase Location: 3213830-3213941 bp Feature: domain Description: GIIM Note: maturase Location: 321 3830-321 3941 bp Feature: gene Location: 3214986-3216893 bp Feature: gene Location: 3217620-3217886 bp Ori: QJP35455.1 Feature: domain Description: HTH_Tnp_1 Location: 3217626-3217833 bp Feature: domain Description: HTH_Tnp_1 Location: 321 7626-321 7833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT antidote_HigA (TIGR02607), HigB (COG4680), RVT-GII, GIIM (pfam08388), PIN_8 (pfam18476), HTH_XRE (smart00530), HTH_28 (pfam13518), Tra5 (COG2801), AmpC (COG1680), DUF3471 (pfam11954)
HigB_toxin (pfam09907), HigA (COG5499), HTH_Tnp_1 (pfam01527)