myRT

myRT report for GCA_013000945.1_ASM1300094v1

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Seq: CP053027.1 Streptococcus agalactiae strain 01173 chromosome, complete genome (2105299 bp)
Overview 1 RT 1: 99017-103534 bp 2 RT 2: 568042-575414 bp 3 RT 3: 766050-772090 bp 4 RT 4: 936603-943535 bp 5 RT 5: 1540914-1548085 bp 6 RT 6: 1593461-1602002 bp 7 RT 7: 2018066-2023846 bp Neighborhood of RT #1 [99017, 103557] NTP_transf_6 DUF2992 RVT-GII GIIM PRK08295 PhoE Neighborhood of RT #2 [568042, 575428] TTHA1623-like_MBL-fold PRK08643 RVT-GII GIIM PRK07246 PRK05764 Neighborhood of RT #3 [766050, 772092] Cof PRK10416 RVT-GII GIIM YcgQ YraQ Neighborhood of RT #4 [936603, 943540] PRK11856 lipoamide_DH lipoyltrans RVT-GII GIIM COG3442 MurE Neighborhood of RT #5 [1540914, 1548090] DUF4956 PolyPPase_VTC_like RVT-GII GIIM Branch_AA_trans PRK12267 Neighborhood of RT #6 [1593461, 1602004] MurC RVT-GII GIIM HepA Der Neighborhood of RT #7 [2018066, 2023854] rpmF rpmG RVT-GII GIIM Surf_Exclu_PgrA Surf_Exclu_PgrA Surf_Exclu_PgrA LPXTG_anchor Feature: gene Location: 99017-99568 bp Ori: QJQ91956.1 Feature: domain Description: NTP_transf_6 Location: 99077-99557 bp Feature: domain Description: NTP_transf_6 Location: 99077-99557 bp Feature: gene Location: 99788-100207 bp Ori: QJQ91957.1 Feature: domain Description: DUF2992 Location: 99797-100205 bp Feature: domain Description: DUF2992 Location: 99797-1 00205 bp Feature: gene Location: 100771-102048 bp Ori: QJQ93755.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100975-101590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 00975-1 01 590 bp Feature: domain Description: GIIM Note: maturase Location: 101644-101860 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 644-1 01 860 bp Feature: gene Location: 102264-102743 bp Ori: QJQ91958.1 Feature: domain Description: PRK08295 Location: 102279-102504 bp Feature: domain Description: PRK08295 Location: 1 02279-1 02504 bp Feature: gene Location: 102865-103557 bp Ori: QJQ91959.1 Feature: domain Description: PhoE Location: 102874-103534 bp Feature: domain Description: PhoE Location: 1 02874-1 03534 bp Feature: gene Location: 568042-568740 bp Ori: QJQ92386.1 Feature: domain Description: TTHA1623-like_MBL-fold Location: 568141-568732 bp Feature: domain Description: TTHA1 623-like_MBL-fold Location: 5681 41 -568732 bp Feature: gene Location: 568908-569672 bp Ori: QJQ92387.1 Feature: domain Description: PRK08643 Location: 568911-569670 bp Feature: domain Description: PRK08643 Location: 56891 1 -569670 bp Feature: gene Location: 570235-571512 bp Ori: QJQ93764.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570439-571054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570439-571 054 bp Feature: domain Description: GIIM Note: maturase Location: 571108-571324 bp Feature: domain Description: GIIM Note: maturase Location: 571 1 08-571 324 bp Feature: gene Location: 571642-574149 bp Ori: QJQ92388.1 Feature: domain Description: PRK07246 Location: 571687-574147 bp Feature: domain Description: PRK07246 Location: 571 687-5741 47 bp Feature: gene Location: 574235-575428 bp Ori: QJQ92389.1 Feature: domain Description: PRK05764 Location: 574241-575414 bp Feature: domain Description: PRK05764 Location: 574241 -57541 4 bp Feature: gene Location: 766050-766874 bp Ori: QJQ92551.1 Feature: domain Description: Cof Location: 766059-766860 bp Feature: domain Description: Cof Location: 766059-766860 bp Feature: gene Location: 766874-768484 bp Ori: QJQ92552.1 Gene: ftsY Feature: domain Description: PRK10416 Location: 767198-768473 bp Feature: domain Description: PRK1 041 6 Location: 7671 98-768473 bp Feature: gene Location: 769035-770312 bp Ori: QJQ93771.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769239-769854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769239-769854 bp Feature: domain Description: GIIM Note: maturase Location: 769908-770124 bp Feature: domain Description: GIIM Note: maturase Location: 769908-7701 24 bp Feature: gene Location: 770378-771190 bp Ori: QJQ92553.1 Feature: domain Description: YcgQ Location: 770381-771188 bp Feature: domain Description: YcgQ Location: 770381 -771 1 88 bp Feature: gene Location: 771190-772092 bp Ori: QJQ92554.1 Feature: domain Description: YraQ Location: 771193-772090 bp Feature: domain Description: YraQ Location: 771 1 93-772090 bp Feature: gene Location: 936603-938360 bp Ori: QJQ92698.1 Gene: lpdA Feature: domain Description: PRK11856 Location: 936606-936954 bp Feature: domain Description: PRK1 1 856 Location: 936606-936954 bp Feature: domain Description: lipoamide_DH Location: 936981-938340 bp Feature: domain Description: lipoamide_DH Location: 936981 -938340 bp Feature: gene Location: 938458-939447 bp Ori: QJQ92699.1 Feature: domain Description: lipoyltrans Location: 938473-939421 bp Feature: domain Description: lipoyltrans Location: 938473-939421 bp Feature: gene Location: 940069-941346 bp Ori: QJQ93777.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 940273-940888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 940273-940888 bp Feature: domain Description: GIIM Note: maturase Location: 940942-941158 bp Feature: domain Description: GIIM Note: maturase Location: 940942-941 1 58 bp Feature: gene Location: 941412-942197 bp Ori: QJQ92700.1 Feature: domain Description: COG3442 Location: 941460-942186 bp Feature: domain Description: COG3442 Location: 941 460-9421 86 bp Feature: gene Location: 942197-943540 bp Ori: QJQ92701.1 Feature: domain Description: MurE Location: 942230-943535 bp Feature: domain Description: MurE Location: 942230-943535 bp Feature: gene Location: 1540914-1541591 bp Ori: QJQ93234.1 Feature: domain Description: DUF4956 Location: 1541001-1541364 bp Feature: domain Description: DUF4956 Location: 1 541 001 -1 541 364 bp Feature: gene Location: 1541643-1542338 bp Ori: QJQ93798.1 Feature: domain Description: PolyPPase_VTC_like Location: 1541661-1542303 bp Feature: domain Description: PolyPPase_VTC_like Location: 1 541 661 -1 542303 bp Feature: gene Location: 1542707-1543984 bp Ori: QJQ93799.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542911-1543526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 54291 1 -1 543526 bp Feature: domain Description: GIIM Note: maturase Location: 1543580-1543796 bp Feature: domain Description: GIIM Note: maturase Location: 1 543580-1 543796 bp Feature: gene Location: 1544560-1545897 bp Ori: QJQ93235.1 Gene: brnQ Feature: domain Description: Branch_AA_trans Location: 1544569-1545853 bp Feature: domain Description: Branch_AA_trans Location: 1 544569-1 545853 bp Feature: gene Location: 1546093-1548090 bp Ori: QJQ93236.1 Gene: metG Feature: domain Description: PRK12267 Location: 1546102-1548085 bp Feature: domain Description: PRK1 2267 Location: 1 5461 02-1 548085 bp Feature: gene Location: 1593461-1594792 bp Ori: QJQ93289.1 Feature: domain Description: MurC Location: 1593470-1594766 bp Feature: domain Description: MurC Location: 1 593470-1 594766 bp Feature: gene Location: 1594802-1595419 bp Feature: gene Location: 1595591-1596868 bp Ori: QJQ93800.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1595795-1596410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 595795-1 59641 0 bp Feature: domain Description: GIIM Note: maturase Location: 1596464-1596680 bp Feature: domain Description: GIIM Note: maturase Location: 1 596464-1 596680 bp Feature: gene Location: 1597441-1600539 bp Ori: QJQ93291.1 Feature: domain Description: HepA Location: 1598983-1600531 bp Feature: domain Description: HepA Location: 1 598983-1 600531 bp Feature: gene Location: 1600694-1602004 bp Ori: QJQ93292.1 Gene: der Feature: domain Description: Der Location: 1600697-1602002 bp Feature: domain Description: Der Location: 1 600697-1 602002 bp Feature: gene Location: 2018066-2018248 bp Ori: QJQ93669.1 Gene: rpmF Feature: domain Description: rpmF Location: 2018069-2018231 bp Feature: domain Description: rpmF Location: 201 8069-201 8231 bp Feature: gene Location: 2018264-2018413 bp Ori: QJQ93670.1 Gene: rpmG Feature: domain Description: rpmG Location: 2018267-2018411 bp Feature: domain Description: rpmG Location: 201 8267-201 841 1 bp Feature: gene Location: 2018713-2019990 bp Ori: QJQ93824.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2018917-2019532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 891 7-201 9532 bp Feature: domain Description: GIIM Note: maturase Location: 2019586-2019802 bp Feature: domain Description: GIIM Note: maturase Location: 201 9586-201 9802 bp Feature: gene Location: 2020551-2021012 bp Feature: gene Location: 2021017-2023854 bp Ori: QJQ93672.1 Feature: domain Description: Surf_Exclu_PgrA Location: 2021119-2021494 bp Feature: domain Description: Surf_Exclu_PgrA Location: 2021 1 1 9-2021 494 bp Feature: domain Description: Surf_Exclu_PgrA Location: 2021596-2021899 bp Feature: domain Description: Surf_Exclu_PgrA Location: 2021 596-2021 899 bp Feature: domain Description: Surf_Exclu_PgrA Location: 2021971-2023180 bp Feature: domain Description: Surf_Exclu_PgrA Location: 2021 971 -20231 80 bp Feature: domain Description: LPXTG_anchor Location: 2023753-2023846 bp Feature: domain Description: LPXTG_anchor Location: 2023753-2023846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transf_6 (pfam06042), DUF2992 (pfam11208), RVT-GII, GIIM (pfam08388), PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406), TTHA1623-like_MBL-fold (cd16322), PRK08643 ((S)-acetoin forming diacetyl reductase), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK05764 (aspartate aminotransferase; Provisional)
Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), YcgQ (COG3689), YraQ (COG0701), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), lipoyltrans (TIGR00545), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), DUF4956 (pfam16316)
PolyPPase_VTC_like (cd07750), Branch_AA_trans (pfam05525), PRK12267 (methionyl-tRNA synthetase; Reviewed), MurC (COG0773), HepA (COG0553), Der (COG1160), rpmF (PRK12286), rpmG (PRK00595), Surf_Exclu_PgrA (TIGR04320), LPXTG_anchor (TIGR01167)