myRT

myRT report for GCA_013000985.1_ASM1300098v1

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Seq: CP053032.1 Halomonas sp. PGE1 chromosome, complete genome (3905792 bp)
Overview 1 RT 1: 336007-341467 bp 2 RT 2: 584849-591899 bp 3 RT 3: 968137-974210 bp 4 RT 4: 1079550-1085338 bp 5 RT 5: 1115644-1124896 bp 6 RT 6: 1286166-1291770 bp 7 RT 7: 1577981-1581809 bp 8 RT 8: 1685598-1691530 bp 9 RT 9: 1969172-1975849 bp 10 RT 10: 2112731-2119212 bp 11 RT 11: 3120894-3129362 bp 12 RT 12: 3391595-3399279 bp 13 RT 13: 3810854-3814989 bp Neighborhood of RT #1 [336007, 341475] AhpC AhpF RVT-GII GIIM PRK10903 Neighborhood of RT #2 [584849, 591979] COG4191 pdhR RVT-GII GIIM GlpC LutB Neighborhood of RT #3 [968137, 974266] PotA gram_neg_porins RVT-GII GIIM PhnE PhnC Neighborhood of RT #4 [1079550, 1085361] adk COG3547 RVT-GII GIIM T6A_YeaZ SAM_MT Neighborhood of RT #5 [1115644, 1124898] PRK14488 COG3571 RVT-GII GIIM DCR_FMN PRK11749 mycofact_OYE_2 PRK15455 Neighborhood of RT #6 [1286166, 1291778] HBDH_SDR_c DDE_Tnp_1_4 RVT-GII HBDH_SDR_c PRK07516 Neighborhood of RT #7 [1577981, 1581895] Zn_Tnp_IS91 DDE_Tnp_1_assoc RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 GIIM Neighborhood of RT #8 [1685598, 1691535] MSCRAMM_SdrC AzgA RVT-GII GIIM PRK09257 phhB Neighborhood of RT #9 [1969172, 1975983] PLN02519 InsQ RVT-GII GIIM Sbt_1 HTH_1 PBP2_CbbR_RubisCO_like Neighborhood of RT #10 [2112731, 2119214] KOG3954 YrpB RVT-GII GIIM DUF4096 KOG2415 Neighborhood of RT #11 [3120894, 3129373] GatA AcrB RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 DDE_Tnp_1_4 Neighborhood of RT #12 [3391595, 3399311] KOG2621 NfeD RVT-GII GIIM PRK07482 ALDH_F5_SSADH_GabD Neighborhood of RT #13 [3810854, 3815012] RVT-GII RAYT Feature: gene Location: 336007-336570 bp Ori: QJQ97527.1 Gene: ahpC Feature: domain Description: AhpC Location: 336010-336568 bp Feature: domain Description: AhpC Location: 33601 0-336568 bp Feature: gene Location: 336880-338436 bp Ori: QJQ97528.1 Gene: ahpF Feature: domain Description: AhpF Location: 336883-338431 bp Feature: domain Description: AhpF Location: 336883-338431 bp Feature: gene Location: 338968-340362 bp Ori: QJR00445.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339310-339928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33931 0-339928 bp Feature: domain Description: GIIM Note: maturase Location: 339979-340201 bp Feature: domain Description: GIIM Note: maturase Location: 339979-340201 bp Feature: gene Location: 340482-340850 bp Feature: gene Location: 340873-341475 bp Ori: QJQ97530.1 Feature: domain Description: PRK10903 Location: 340921-341467 bp Feature: domain Description: PRK1 0903 Location: 340921 -341 467 bp Feature: gene Location: 584849-586687 bp Ori: QJR00462.1 Feature: domain Description: COG4191 Location: 584855-586628 bp Feature: domain Description: COG41 91 Location: 584855-586628 bp Feature: gene Location: 586750-587535 bp Ori: QJQ97726.1 Feature: domain Description: pdhR Location: 586753-587500 bp Feature: domain Description: pdhR Location: 586753-587500 bp Feature: gene Location: 588081-589475 bp Ori: QJR00463.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588423-589041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588423-589041 bp Feature: domain Description: GIIM Note: maturase Location: 589092-589314 bp Feature: domain Description: GIIM Note: maturase Location: 589092-58931 4 bp Feature: gene Location: 589758-590513 bp Ori: QJQ97727.1 Feature: domain Description: GlpC Location: 589797-590490 bp Feature: domain Description: GlpC Location: 589797-590490 bp Feature: gene Location: 590510-591979 bp Ori: QJQ97728.1 Feature: domain Description: LutB Location: 590537-591899 bp Feature: domain Description: LutB Location: 590537-591 899 bp Feature: gene Location: 968137-969234 bp Ori: QJQ98050.1 Feature: domain Description: PotA Location: 968143-969157 bp Feature: domain Description: PotA Location: 9681 43-9691 57 bp Feature: gene Location: 969470-970522 bp Ori: QJQ98051.1 Feature: domain Description: gram_neg_porins Location: 969566-970520 bp Feature: domain Description: gram_neg_porins Location: 969566-970520 bp Feature: gene Location: 971130-972524 bp Ori: QJR00484.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971472-972090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971 472-972090 bp Feature: domain Description: GIIM Note: maturase Location: 972141-972363 bp Feature: domain Description: GIIM Note: maturase Location: 9721 41 -972363 bp Feature: gene Location: 972706-973506 bp Ori: QJQ98052.1 Gene: phnE Feature: domain Description: PhnE Location: 972769-973501 bp Feature: domain Description: PhnE Location: 972769-973501 bp Feature: gene Location: 973463-974266 bp Ori: QJQ98053.1 Gene: phnC Feature: domain Description: PhnC Location: 973466-974210 bp Feature: domain Description: PhnC Location: 973466-97421 0 bp Feature: gene Location: 1079550-1080206 bp Ori: QJQ98141.1 Gene: adk Feature: domain Description: adk Location: 1079553-1080201 bp Feature: domain Description: adk Location: 1 079553-1 080201 bp Feature: gene Location: 1080474-1081514 bp Ori: QJQ98142.1 Feature: domain Description: COG3547 Location: 1080486-1081458 bp Feature: domain Description: COG3547 Location: 1 080486-1 081 458 bp Feature: gene Location: 1082361-1083755 bp Ori: QJR00492.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1082703-1083321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 082703-1 083321 bp Feature: domain Description: GIIM Note: maturase Location: 1083372-1083594 bp Feature: domain Description: GIIM Note: maturase Location: 1 083372-1 083594 bp Feature: gene Location: 1083896-1084600 bp Ori: QJR00493.1 Gene: tsaB Feature: domain Description: T6A_YeaZ Location: 1083908-1084571 bp Feature: domain Description: T6A_YeaZ Location: 1 083908-1 084571 bp Feature: gene Location: 1084582-1085361 bp Ori: QJR00494.1 Feature: domain Description: SAM_MT Location: 1084648-1085338 bp Feature: domain Description: SAM_MT Location: 1 084648-1 085338 bp Feature: gene Location: 1115644-1117068 bp Ori: QJQ98165.1 Gene: ccoN Feature: domain Description: PRK14488 Location: 1115665-1117042 bp Feature: domain Description: PRK1 4488 Location: 1 1 1 5665-1 1 1 7042 bp Feature: gene Location: 1117378-1117950 bp Ori: QJR00497.1 Feature: domain Description: COG3571 Location: 1117381-1117939 bp Feature: domain Description: COG3571 Location: 1 1 1 7381 -1 1 1 7939 bp Feature: gene Location: 1119109-1120503 bp Ori: QJR00498.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119451-1120069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 9451 -1 1 20069 bp Feature: domain Description: GIIM Note: maturase Location: 1120120-1120342 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 201 20-1 1 20342 bp Feature: gene Location: 1120709-1122721 bp Ori: QJQ98166.1 Feature: domain Description: DCR_FMN Location: 1120730-1121786 bp Feature: domain Description: DCR_FMN Location: 1 1 20730-1 1 21 786 bp Feature: domain Description: PRK11749 Location: 1121804-1122266 bp Feature: domain Description: PRK1 1 749 Location: 1 1 21 804-1 1 22266 bp Feature: domain Description: mycofact_OYE_2 Location: 1122458-1122716 bp Feature: domain Description: mycofact_OYE_2 Location: 1 1 22458-1 1 2271 6 bp Feature: gene Location: 1122976-1124898 bp Ori: QJQ98167.1 Feature: domain Description: PRK15455 Location: 1122979-1124896 bp Feature: domain Description: PRK1 5455 Location: 1 1 22979-1 1 24896 bp Feature: gene Location: 1286166-1286522 bp Ori: QJR00514.1 Feature: domain Description: HBDH_SDR_c Location: 1286172-1286517 bp Feature: domain Description: HBDH_SDR_c Location: 1 2861 72-1 28651 7 bp Feature: gene Location: 1286681-1288000 bp Ori: QJQ98300.1 Feature: domain Description: DDE_Tnp_1_4 Location: 1286717-1287989 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 28671 7-1 287989 bp Feature: gene Location: 1288687-1289985 bp Ori: QJQ98301.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1288969-1289638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 288969-1 289638 bp Feature: gene Location: 1290076-1290534 bp Ori: QJQ98302.1 Feature: domain Description: HBDH_SDR_c Location: 1290094-1290532 bp Feature: domain Description: HBDH_SDR_c Location: 1 290094-1 290532 bp Feature: gene Location: 1290612-1291778 bp Ori: QJQ98303.1 Feature: domain Description: PRK07516 Location: 1290618-1291770 bp Feature: domain Description: PRK0751 6 Location: 1 29061 8-1 291 770 bp Feature: gene Location: 1577981-1578214 bp Ori: QJQ98527.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1578002-1578137 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 578002-1 5781 37 bp Feature: gene Location: 1578239-1578724 bp Ori: QJQ98528.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 1578263-1578521 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 1 578263-1 578521 bp Feature: gene Location: 1579183-1580358 bp Ori: QJQ98529.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1579465-1580149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 579465-1 5801 49 bp Feature: gene Location: 1580291-1581547 bp Ori: QJQ98530.1 Feature: domain Description: zf-ISL3 Location: 1580432-1580555 bp Feature: domain Description: zf-ISL3 Location: 1 580432-1 580555 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1580573-1580720 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1 580573-1 580720 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1580765-1581494 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 580765-1 581 494 bp Feature: gene Location: 1581551-1581895 bp Ori: QJQ98531.1 Feature: domain Description: GIIM Note: maturase Location: 1581626-1581809 bp Feature: domain Description: GIIM Note: maturase Location: 1 581 626-1 581 809 bp Feature: gene Location: 1685598-1686284 bp Ori: QJQ98627.1 Feature: domain Description: MSCRAMM_SdrC Location: 1685760-1686150 bp Feature: domain Description: MSCRAMM_SdrC Location: 1 685760-1 6861 50 bp Feature: gene Location: 1686371-1687876 bp Ori: QJQ98628.1 Feature: domain Description: AzgA Location: 1686419-1687835 bp Feature: domain Description: AzgA Location: 1 68641 9-1 687835 bp Feature: gene Location: 1688113-1689507 bp Ori: QJR00545.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1688455-1689073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 688455-1 689073 bp Feature: domain Description: GIIM Note: maturase Location: 1689124-1689346 bp Feature: domain Description: GIIM Note: maturase Location: 1 6891 24-1 689346 bp Feature: gene Location: 1690009-1691196 bp Ori: QJQ98629.1 Feature: domain Description: PRK09257 Location: 1690012-1691191 bp Feature: domain Description: PRK09257 Location: 1 69001 2-1 691 1 91 bp Feature: gene Location: 1691197-1691535 bp Ori: QJQ98630.1 Feature: domain Description: phhB Location: 1691245-1691530 bp Feature: domain Description: phhB Location: 1 691 245-1 691 530 bp Feature: gene Location: 1969172-1970341 bp Ori: QJQ98860.1 Feature: domain Description: PLN02519 Location: 1969205-1970333 bp Feature: domain Description: PLN0251 9 Location: 1 969205-1 970333 bp Feature: gene Location: 1970625-1971800 bp Ori: QJR00559.1 Gene: tnpB Feature: domain Description: InsQ Location: 1970628-1971732 bp Feature: domain Description: InsQ Location: 1 970628-1 971 732 bp Feature: gene Location: 1972409-1973803 bp Ori: QJR00560.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1972751-1973369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 972751 -1 973369 bp Feature: domain Description: GIIM Note: maturase Location: 1973420-1973642 bp Feature: domain Description: GIIM Note: maturase Location: 1 973420-1 973642 bp Feature: gene Location: 1973907-1974848 bp Ori: QJQ98861.1 Feature: domain Description: Sbt_1 Location: 1973922-1974834 bp Feature: domain Description: Sbt_1 Location: 1 973922-1 974834 bp Feature: gene Location: 1974979-1975983 bp Ori: QJQ98862.1 Feature: domain Description: HTH_1 Location: 1975003-1975177 bp Feature: domain Description: HTH_1 Location: 1 975003-1 9751 77 bp Feature: domain Description: PBP2_CbbR_RubisCO_like Location: 1975273-1975849 bp Feature: domain Description: PBP2_CbbR_RubisCO_like Location: 1 975273-1 975849 bp Feature: gene Location: 2112731-2113681 bp Ori: QJQ98991.1 Feature: domain Description: KOG3954 Location: 2112737-2113679 bp Feature: domain Description: KOG3954 Location: 21 1 2737-21 1 3679 bp Feature: gene Location: 2113746-2114702 bp Ori: QJQ98992.1 Feature: domain Description: YrpB Location: 2113770-2114688 bp Feature: domain Description: YrpB Location: 21 1 3770-21 1 4688 bp Feature: gene Location: 2115206-2116600 bp Ori: QJR00565.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2115548-2116166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 5548-21 1 61 66 bp Feature: domain Description: GIIM Note: maturase Location: 2116217-2116439 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 621 7-21 1 6439 bp Feature: gene Location: 2116773-2117524 bp Feature: domain Description: DUF4096 Location: 2116791-2117007 bp Feature: domain Description: DUF4096 Location: 21 1 6791 -21 1 7007 bp Feature: gene Location: 2117550-2119214 bp Ori: QJQ98993.1 Feature: domain Description: KOG2415 Location: 2117562-2119212 bp Feature: domain Description: KOG241 5 Location: 21 1 7562-21 1 921 2 bp Feature: gene Location: 3120894-3122399 bp Ori: QJQ99791.1 Feature: domain Description: GatA Location: 3120921-3122376 bp Feature: domain Description: GatA Location: 31 20921 -31 22376 bp Feature: gene Location: 3122615-3124633 bp Feature: domain Description: AcrB Location: 3122624-3124583 bp Feature: domain Description: AcrB Location: 31 22624-31 24583 bp Feature: gene Location: 3124732-3126030 bp Ori: QJQ99792.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3125014-3125683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 2501 4-31 25683 bp Feature: gene Location: 3126729-3127871 bp Ori: QJR00651.1 Feature: domain Description: zf-ISL3 Location: 3126780-3126915 bp Feature: domain Description: zf-ISL3 Location: 31 26780-31 2691 5 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 3126930-3127077 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 31 26930-31 27077 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3127125-3127842 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 31 271 25-31 27842 bp Feature: gene Location: 3128054-3129373 bp Ori: QJR00652.1 Feature: domain Description: DDE_Tnp_1_4 Location: 3128090-3129362 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 31 28090-31 29362 bp Feature: gene Location: 3391595-3392401 bp Ori: QJQ99996.1 Feature: domain Description: KOG2621 Location: 3391610-3392336 bp Feature: domain Description: KOG2621 Location: 3391 61 0-3392336 bp Feature: gene Location: 3392466-3393986 bp Ori: QJQ99997.1 Feature: domain Description: NfeD Location: 3392508-3393972 bp Feature: domain Description: NfeD Location: 3392508-3393972 bp Feature: gene Location: 3394188-3395582 bp Ori: QJR00678.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3394530-3395148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3394530-33951 48 bp Feature: domain Description: GIIM Note: maturase Location: 3395199-3395421 bp Feature: domain Description: GIIM Note: maturase Location: 33951 99-3395421 bp Feature: gene Location: 3396137-3397555 bp Ori: QJQ99998.1 Feature: domain Description: PRK07482 Location: 3396140-3397523 bp Feature: domain Description: PRK07482 Location: 33961 40-3397523 bp Feature: gene Location: 3397818-3399311 bp Ori: QJR00679.1 Feature: domain Description: ALDH_F5_SSADH_GabD Location: 3397932-3399279 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 3397932-3399279 bp Feature: gene Location: 3810854-3811048 bp Feature: gene Location: 3811174-3812235 bp Feature: gene Location: 3812377-3813684 bp Ori: QJR00331.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3812659-3813328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 2659-381 3328 bp Feature: gene Location: 3814310-3814546 bp Feature: gene Location: 3814641-3815012 bp Ori: QJR00332.1 Feature: domain Description: RAYT Location: 3814644-3814989 bp Feature: domain Description: RAYT Location: 381 4644-381 4989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AhpC (TIGR03137), AhpF (TIGR03140), RVT-GII, GIIM (pfam08388), PRK10903 (peptidylprolyl isomerase A), COG4191 (Signal transduction histidine kinase regulating C4-dicarboxylate transport system ), pdhR (PRK09464), GlpC (COG0247), LutB (COG1139), PotA (COG3842)
gram_neg_porins (cd00342), PhnE (TIGR01097), PhnC (COG3638), adk (TIGR01351), COG3547 (Transposase ), T6A_YeaZ (TIGR03725), SAM_MT (pfam04445), PRK14488 (cbb3-type cytochrome c oxidase subunit I; Provisional), COG3571 (Predicted hydrolase of the alpha/beta-hydrolase fold ), DCR_FMN (cd02930)
PRK11749 (dihydropyrimidine dehydrogenase subunit A; Provisional), mycofact_OYE_2 (TIGR03997), PRK15455 (PrkA family serine protein kinase; Provisional), HBDH_SDR_c (cd08940), DDE_Tnp_1_4 (pfam13701), PRK07516 (thiolase domain-containing protein), Zn_Tnp_IS91 (pfam14319), DDE_Tnp_1_assoc (pfam13808), zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542)
DDE_Tnp_ISL3 (pfam01610), MSCRAMM_SdrC (NF000535), AzgA (COG2252), PRK09257 (aromatic amino acid transaminase), phhB (PRK00823), PLN02519 (isovaleryl-CoA dehydrogenase), InsQ (COG0675), Sbt_1 (pfam05982), HTH_1 (pfam00126), PBP2_CbbR_RubisCO_like (cd08419)
KOG3954 (KOG3954, Electron transfer flavoprotein, alpha subunit ), YrpB (COG2070), DUF4096 (pfam13340), KOG2415 (KOG2415, Electron transfer flavoprotein ubiquinone oxidoreductase ), GatA (COG0154), AcrB (COG0841), KOG2621 (KOG2621, Prohibitins and stomatins of the PID superfamily ), NfeD (pfam01957), PRK07482 (hypothetical protein; Provisional), ALDH_F5_SSADH_GabD (cd07103)
RAYT (COG1943)