myRT

myRT report for GCA_013004005.1_ASM1300400v1

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Seq: CP053086.1 Pelagibacterium halotolerans strain ANSP101 chromosome, complete genome (3962298 bp)
Overview 1 RT 1: 569248-574125 bp 2 RT 2: 3747809-3753634 bp Neighborhood of RT #1 [569248, 574160] SSB_OBF RVT-GII group_II_RT_mat HNHc HTH_XRE Neighborhood of RT #2 [3747809, 3753795] Arm-DNA-bind_3 XerC DUF3800 RVT-Retrons COG5340 Feature: gene Location: 569248-569664 bp Feature: gene Location: 570312-570710 bp Ori: QJR17475.1 Feature: domain Description: SSB_OBF Location: 570327-570648 bp Feature: domain Description: SSB_OBF Location: 570327-570648 bp Feature: gene Location: 571332-573218 bp Ori: QJR17476.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 571617-572436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 571 61 7-572436 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 572658-572787 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 572658-572787 bp Feature: domain Description: HNHc Note: nucleases Location: 572988-573141 bp Feature: domain Description: HNHc Note: nucleases Location: 572988-5731 41 bp Feature: gene Location: 573374-573535 bp Feature: gene Location: 573933-574160 bp Ori: QJR20463.1 Feature: domain Description: HTH_XRE Location: 573966-574125 bp Feature: domain Description: HTH_XRE Location: 573966-5741 25 bp Feature: gene Location: 3747809-3749131 bp Ori: QJR20208.1 Feature: domain Description: Arm-DNA-bind_3 Location: 3747821-3748079 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3747821 -3748079 bp Feature: domain Description: XerC Location: 3748172-3748985 bp Feature: domain Description: XerC Location: 37481 72-3748985 bp Feature: gene Location: 3749283-3750350 bp Ori: QJR20738.1 Feature: domain Description: DUF3800 Location: 3749301-3750138 bp Feature: domain Description: DUF3800 Location: 3749301 -37501 38 bp Feature: gene Location: 3750428-3751582 bp Ori: QJR20209.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3750683-3751292 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3750683-3751 292 bp Feature: gene Location: 3751759-3752979 bp Feature: gene Location: 3753172-3753795 bp Ori: QJR20211.1 Feature: domain Description: COG5340 Location: 3753277-3753634 bp Feature: domain Description: COG5340 Location: 3753277-3753634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507), HTH_XRE (smart00530), Arm-DNA-bind_3 (pfam13356), XerC (COG4973), DUF3800 (pfam12686), RVT-Retrons, COG5340 (Transcriptional regulator, predicted component of viral defense system )