myRT

myRT report for GCA_013004045.1_ASM1300404v1

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Seq: CP053082.1 Escherichia coli strain HB37 plasmid pHB37-2, complete sequence (71222 bp)
Overview 1 RT 1: 18656-23553 bp Neighborhood of RT #1 [18656, 24290] DUF1380 RVT_N RVT-GII GIIM HNHc DUF3560 Feature: gene Location: 18656-19078 bp Ori: QJR28074.1 Feature: domain Description: DUF1380 Location: 18659-18953 bp Feature: domain Description: DUF1 380 Location: 1 8659-1 8953 bp Feature: gene Location: 19075-19266 bp Feature: gene Location: 19580-21247 bp Ori: QJR28076.1 Gene: ltrA Feature: domain Description: RVT_N Location: 19628-19865 bp Feature: domain Description: RVT_N Location: 1 9628-1 9865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19916-20558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 991 6-20558 bp Feature: domain Description: GIIM Note: maturase Location: 20609-20843 bp Feature: domain Description: GIIM Note: maturase Location: 20609-20843 bp Feature: domain Description: HNHc Note: nucleases Location: 21053-21212 bp Feature: domain Description: HNHc Note: nucleases Location: 21 053-21 21 2 bp Feature: gene Location: 22647-22877 bp Feature: gene Location: 22929-24290 bp Ori: QJR28078.1 Feature: domain Description: DUF3560 Location: 23196-23553 bp Feature: domain Description: DUF3560 Location: 231 96-23553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083)

Seq: CP053081.1 Escherichia coli strain HB37 plasmid pHB37-1, complete sequence (103328 bp)
Overview 1 RT 1: 35284-39820 bp Neighborhood of RT #1 [35284, 39825] DUF1380 RVT_N RVT-GII GIIM HNHc PRK13732 DUF905 Feature: gene Location: 35284-35706 bp Ori: QJR27983.1 Feature: domain Description: DUF1380 Location: 35287-35581 bp Feature: domain Description: DUF1380 Location: 352 87-35581 bp Feature: gene Location: 35703-35894 bp Feature: gene Location: 36172-37839 bp Ori: QJR27985.1 Gene: ltrA Feature: domain Description: RVT_N Location: 36220-36457 bp Feature: domain Description: RVT_N Location: 362 2 0-36457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36508-37150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36508-37150 bp Feature: domain Description: GIIM Note: maturase Location: 37201-37435 bp Feature: domain Description: GIIM Note: maturase Location: 372 01-37435 bp Feature: domain Description: HNHc Note: nucleases Location: 37645-37804 bp Feature: domain Description: HNHc Note: nucleases Location: 37645-37804 bp Feature: gene Location: 39007-39534 bp Ori: QJR27986.1 Feature: domain Description: PRK13732 Location: 39010-39532 bp Feature: domain Description: PRK13732 Location: 39010-39532 bp Feature: gene Location: 39592-39825 bp Ori: QJR27987.1 Feature: domain Description: DUF905 Location: 39622-39820 bp Feature: domain Description: DUF905 Location: 3962 2 -3982 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP053080.1 Escherichia coli strain HB37 chromosome HB37, complete sequence (5307814 bp)
Overview 1 RT 1: 65762-74908 bp 2 RT 2: 95415-102691 bp 3 RT 3: 146069-150458 bp 4 RT 4: 1409018-1415684 bp Neighborhood of RT #1 [65762, 74908] DDE_Tnp_IS66_C RVT-GII group_II_RT_mat COG3436 HTH_23 InsE PHA02517 RVT-GII GIIM FHA_bHelix Fil_haemagg FHA_bHelix Neighborhood of RT #2 [95415, 102849] AraC InsG RVT-GII GIIM YcaC_related Neighborhood of RT #3 [146069, 150469] TnpB_IS66 COG3547 RVT-GII fecB Neighborhood of RT #4 [1409018, 1415684] COG4584 PRK09183 RVT-AbiP2 HTH_29 HTH_33 DDE_3 Feature: gene Location: 65762-66141 bp Feature: gene Location: 66177-66356 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 66222-66333 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 66222-663 3 3 bp Feature: gene Location: 66440-67565 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66536-67061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6653 6-67061 bp Feature: gene Location: 67546-67670 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 67579-67666 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 67579-67666 bp Feature: gene Location: 68173-69563 bp Feature: domain Description: COG3436 Location: 68485-68956 bp Feature: domain Description: COG3 43 6 Location: 68485-68956 bp Feature: gene Location: 69930-70580 bp Ori: QJR23307.1 Feature: domain Description: HTH_23 Location: 69981-70080 bp Feature: domain Description: HTH_23 Location: 69981-70080 bp Feature: domain Description: InsE Location: 70206-70557 bp Feature: domain Description: InsE Location: 70206-70557 bp Feature: gene Location: 70982-71161 bp Feature: domain Description: PHA02517 Location: 70985-71162 bp Feature: domain Description: PHA02517 Location: 70985-71162 bp Feature: gene Location: 71244-72749 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71502-72234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71502-7223 4 bp Feature: domain Description: GIIM Note: maturase Location: 72354-72531 bp Feature: domain Description: GIIM Note: maturase Location: 723 54-7253 1 bp Feature: gene Location: 73402-74646 bp Feature: domain Description: FHA_bHelix Location: 73405-73942 bp Feature: domain Description: FHA_bHelix Location: 73 405-73 942 bp Feature: domain Description: Fil_haemagg Location: 74035-74179 bp Feature: domain Description: Fil_haemagg Location: 7403 5-74179 bp Feature: domain Description: FHA_bHelix Location: 74536-74635 bp Feature: domain Description: FHA_bHelix Location: 7453 6-7463 5 bp Feature: gene Location: 74638-74908 bp Feature: gene Location: 95415-96287 bp Ori: QJR23320.1 Feature: domain Description: AraC Location: 95955-96282 bp Feature: domain Description: AraC Location: 95955-96282 bp Feature: gene Location: 97598-98518 bp Feature: domain Description: InsG Location: 97601-98516 bp Feature: domain Description: InsG Location: 97601-98516 bp Feature: gene Location: 98905-100293 bp Ori: QJR23321.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99235-99853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9923 5-99853 bp Feature: domain Description: GIIM Note: maturase Location: 99901-100132 bp Feature: domain Description: GIIM Note: maturase Location: 99901-10013 2 bp Feature: gene Location: 100861-101066 bp Feature: gene Location: 102169-102849 bp Ori: QJR23322.1 Feature: domain Description: YcaC_related Location: 102214-102691 bp Feature: domain Description: YcaC_related Location: 102214-102691 bp Feature: gene Location: 146069-146254 bp Feature: domain Description: TnpB_IS66 Location: 146072-146222 bp Feature: domain Description: TnpB_IS66 Location: 146072-146222 bp Feature: gene Location: 146506-147508 bp Feature: domain Description: COG3547 Location: 146524-146815 bp Feature: domain Description: COG3 547 Location: 146524-146815 bp Feature: gene Location: 147747-149081 bp Ori: QJR23350.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148032-148719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14803 2-148719 bp Feature: gene Location: 149682-149840 bp Feature: gene Location: 150029-150469 bp Ori: QJR23352.1 Feature: domain Description: fecB Location: 150032-150458 bp Feature: domain Description: fecB Location: 15003 2-150458 bp Feature: gene Location: 1409018-1410040 bp Ori: QJR24432.1 Feature: domain Description: COG4584 Location: 1409021-1409891 bp Feature: domain Description: COG4584 Location: 1409021-1409891 bp Feature: gene Location: 1410040-1410819 bp Ori: QJR24433.1 Feature: domain Description: PRK09183 Location: 1410046-1410817 bp Feature: domain Description: PRK09183 Location: 1410046-1410817 bp Feature: gene Location: 1410858-1412228 bp Ori: QJR24434.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1411119-1411575 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1411119-1411575 bp Feature: gene Location: 1412330-1413367 bp Ori: QJR24435.1 Feature: domain Description: HTH_29 Location: 1412426-1412597 bp Feature: domain Description: HTH_29 Location: 1412426-1412597 bp Feature: domain Description: HTH_33 Location: 1412630-1412792 bp Feature: domain Description: HTH_3 3 Location: 141263 0-1412792 bp Feature: domain Description: DDE_3 Location: 1412834-1413263 bp Feature: domain Description: DDE_3 Location: 141283 4-1413 263 bp Feature: gene Location: 1414800-1415684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, group_II_RT_mat (TIGR04416), COG3436 (Transposase ), HTH_23 (pfam13384), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), FHA_bHelix (sd00046), Fil_haemagg (pfam05594)
AraC (COG2207), InsG (COG3385), YcaC_related (cd01012), TnpB_IS66 (pfam05717), COG3547 (Transposase ), fecB (PRK11411), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), RVT-AbiP2, HTH_29 (pfam13551)
HTH_33 (pfam13592), DDE_3 (pfam13358)