myRT

myRT report for GCA_013009555.1_ASM1300955v1

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Seq: CP046176.1 Bacteroides dorei strain DSM 17855 chromosome, complete genome (5625488 bp)
Overview 1 RT 1: 1393890-1400621 bp 2 RT 2: 2347610-2353955 bp 3 RT 3: 2851811-2858174 bp 4 RT 4: 3653444-3658343 bp 5 RT 5: 3775163-3783247 bp 6 RT 6: 4791429-4807649 bp 7 RT 7: 4811424-4817112 bp 8 RT 8: 5399961-5405879 bp 9 RT 9: 5411984-5418502 bp Neighborhood of RT #1 [1393890, 1401301] HTH_26 Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G SMC_prok_B Neighborhood of RT #2 [2347610, 2354170] DUF4326 TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Relaxase Relaxase Neighborhood of RT #3 [2851811, 2858174] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #4 [3653444, 3658870] MobC Toprim_2 RVT-GII Intron_maturas2 COG3378 Neighborhood of RT #5 [3775163, 3783348] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-UG8 RVT-UG3 HTH_17 HTH_17 Neighborhood of RT #6 [4791429, 4807867] TraG-D_C RVT-GII Intron_maturas2 HNHc RVT-GII Intron_maturas2 HNHc RVT-GII Intron_maturas2 HNHc RVT-GII Intron_maturas2 HNHc RVT-GII Intron_maturas2 HNHc YWFCY Relaxase Relaxase Neighborhood of RT #7 [4811424, 4817129] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3876 Neighborhood of RT #8 [5399961, 5405923] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #9 [5411984, 5418502] Relaxase Relaxase YWFCY RVT-GII Intron_maturas2 HNHc TraG-D_C Feature: gene Location: 1393890-1394099 bp Ori: QJR75891.1 Feature: domain Description: HTH_26 Location: 1393914-1394091 bp Feature: domain Description: HTH_26 Location: 1 39391 4-1 394091 bp Feature: gene Location: 1394705-1395532 bp Feature: domain Description: Bac_Flav_CT_G Location: 1394708-1395005 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 394708-1 395005 bp Feature: domain Description: Bac_Flav_CT_G Location: 1395074-1395533 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 395074-1 395533 bp Feature: gene Location: 1396106-1397917 bp Ori: QJR75892.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1396370-1397192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 396370-1 3971 92 bp Feature: domain Description: Intron_maturas2 Location: 1397264-1397594 bp Feature: domain Description: Intron_maturas2 Location: 1 397264-1 397594 bp Feature: domain Description: HNHc Note: nucleases Location: 1397738-1397888 bp Feature: domain Description: HNHc Note: nucleases Location: 1 397738-1 397888 bp Feature: gene Location: 1397995-1398540 bp Ori: QJR75893.1 Feature: domain Description: Bac_Flav_CT_G Location: 1398019-1398427 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 39801 9-1 398427 bp Feature: gene Location: 1398791-1401301 bp Ori: QJR75894.1 Feature: domain Description: SMC_prok_B Location: 1400309-1400621 bp Feature: domain Description: SMC_prok_B Location: 1 400309-1 400621 bp Feature: gene Location: 2347610-2348143 bp Ori: QJR76657.1 Feature: domain Description: DUF4326 Location: 2347625-2347880 bp Feature: domain Description: DUF4326 Location: 2347625-2347880 bp Feature: gene Location: 2348365-2349534 bp Ori: QJR76658.1 Feature: domain Description: TraG-D_C Location: 2348890-2349223 bp Feature: domain Description: TraG-D_C Location: 2348890-2349223 bp Feature: gene Location: 2349521-2351326 bp Ori: QJR76659.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2349785-2350607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2349785-2350607 bp Feature: domain Description: Intron_maturas2 Location: 2350685-2351015 bp Feature: domain Description: Intron_maturas2 Location: 2350685-2351 01 5 bp Feature: domain Description: HNHc Note: nucleases Location: 2351159-2351303 bp Feature: domain Description: HNHc Note: nucleases Location: 2351 1 59-2351 303 bp Feature: gene Location: 2351892-2352881 bp Feature: domain Description: YWFCY Location: 2351898-2352075 bp Feature: domain Description: YWFCY Location: 2351 898-2352075 bp Feature: gene Location: 2352917-2354170 bp Ori: QJR76660.1 Feature: domain Description: Relaxase Location: 2353097-2353703 bp Feature: domain Description: Relaxase Location: 2353097-2353703 bp Feature: domain Description: Relaxase Location: 2353721-2353955 bp Feature: domain Description: Relaxase Location: 2353721 -2353955 bp Feature: gene Location: 2851811-2852101 bp Feature: gene Location: 2852117-2854483 bp Ori: QJR77073.1 Feature: domain Description: Bac_Flav_CT_G Location: 2852195-2853701 bp Feature: domain Description: Bac_Flav_CT_G Location: 28521 95-2853701 bp Feature: domain Description: Bac_Flav_CT_G Location: 2854097-2854469 bp Feature: domain Description: Bac_Flav_CT_G Location: 2854097-2854469 bp Feature: gene Location: 2855030-2856841 bp Ori: QJR77074.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2855294-2856116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2855294-28561 1 6 bp Feature: domain Description: Intron_maturas2 Location: 2856188-2856518 bp Feature: domain Description: Intron_maturas2 Location: 28561 88-285651 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2856662-2856812 bp Feature: domain Description: HNHc Note: nucleases Location: 2856662-285681 2 bp Feature: gene Location: 2856943-2857440 bp Feature: domain Description: Bac_Flav_CT_G Location: 2856946-2857357 bp Feature: domain Description: Bac_Flav_CT_G Location: 2856946-2857357 bp Feature: gene Location: 2857434-2858174 bp Feature: gene Location: 3653444-3653809 bp Ori: QJR77719.1 Gene: mobC Feature: domain Description: MobC Location: 3653672-3653801 bp Feature: domain Description: MobC Location: 3653672-3653801 bp Feature: gene Location: 3653986-3654879 bp Ori: QJR79226.1 Feature: domain Description: Toprim_2 Location: 3654520-3654799 bp Feature: domain Description: Toprim_2 Location: 3654520-3654799 bp Feature: gene Location: 3654869-3656677 bp Ori: QJR77720.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3655133-3655955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36551 33-3655955 bp Feature: domain Description: Intron_maturas2 Location: 3656024-3656333 bp Feature: domain Description: Intron_maturas2 Location: 3656024-3656333 bp Feature: gene Location: 3657240-3657407 bp Feature: gene Location: 3657665-3658870 bp Ori: QJR77721.1 Feature: domain Description: COG3378 Location: 3658034-3658343 bp Feature: domain Description: COG3378 Location: 3658034-3658343 bp Feature: gene Location: 3775163-3776392 bp Ori: QJR77800.1 Feature: domain Description: Arm-DNA-bind_5 Location: 3775196-3775439 bp Feature: domain Description: Arm-DNA-bind_5 Location: 37751 96-3775439 bp Feature: domain Description: Phage_int_SAM_5 Location: 3775547-3775781 bp Feature: domain Description: Phage_int_SAM_5 Location: 3775547-3775781 bp Feature: domain Description: INTN1_C_like Location: 3775853-3776333 bp Feature: domain Description: INTN1 _C_like Location: 3775853-3776333 bp Feature: gene Location: 3776412-3777629 bp Ori: QJR77801.1 Feature: domain Description: Arm-DNA-bind_5 Location: 3776439-3776652 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3776439-3776652 bp Feature: domain Description: Phage_int_SAM_5 Location: 3776772-3777024 bp Feature: domain Description: Phage_int_SAM_5 Location: 3776772-3777024 bp Feature: domain Description: INTN1_C_like Location: 3777078-3777555 bp Feature: domain Description: INTN1 _C_like Location: 3777078-3777555 bp Feature: gene Location: 3778773-3781034 bp Ori: QJR77802.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3779385-3779841 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3779385-3779841 bp Feature: gene Location: 3781025-3782467 bp Ori: QJR77803.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3781502-3782018 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3781 502-378201 8 bp Feature: gene Location: 3782697-3783005 bp Ori: QJR77804.1 Feature: domain Description: HTH_17 Location: 3782841-3782985 bp Feature: domain Description: HTH_1 7 Location: 3782841 -3782985 bp Feature: gene Location: 3782998-3783348 bp Ori: QJR77805.1 Feature: domain Description: HTH_17 Location: 3783118-3783247 bp Feature: domain Description: HTH_1 7 Location: 37831 1 8-3783247 bp Feature: gene Location: 4791429-4791995 bp Feature: gene Location: 4792114-4793280 bp Ori: QJR78445.1 Feature: domain Description: TraG-D_C Location: 4792639-4792972 bp Feature: domain Description: TraG-D_C Location: 4792639-4792972 bp Feature: gene Location: 4793267-4795072 bp Ori: QJR78446.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4793531-4794353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4793531 -4794353 bp Feature: domain Description: Intron_maturas2 Location: 4794431-4794761 bp Feature: domain Description: Intron_maturas2 Location: 4794431 -4794761 bp Feature: domain Description: HNHc Note: nucleases Location: 4794905-4795049 bp Feature: domain Description: HNHc Note: nucleases Location: 4794905-4795049 bp Feature: gene Location: 4795756-4797561 bp Ori: QJR78447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4796020-4796842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4796020-4796842 bp Feature: domain Description: Intron_maturas2 Location: 4796920-4797250 bp Feature: domain Description: Intron_maturas2 Location: 4796920-4797250 bp Feature: domain Description: HNHc Note: nucleases Location: 4797394-4797538 bp Feature: domain Description: HNHc Note: nucleases Location: 4797394-4797538 bp Feature: gene Location: 4798245-4800050 bp Ori: QJR78448.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4798509-4799331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4798509-4799331 bp Feature: domain Description: Intron_maturas2 Location: 4799409-4799739 bp Feature: domain Description: Intron_maturas2 Location: 4799409-4799739 bp Feature: domain Description: HNHc Note: nucleases Location: 4799883-4800027 bp Feature: domain Description: HNHc Note: nucleases Location: 4799883-4800027 bp Feature: gene Location: 4800734-4802539 bp Ori: QJR78449.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4800998-4801820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4800998-4801 820 bp Feature: domain Description: Intron_maturas2 Location: 4801898-4802228 bp Feature: domain Description: Intron_maturas2 Location: 4801 898-4802228 bp Feature: domain Description: HNHc Note: nucleases Location: 4802372-4802516 bp Feature: domain Description: HNHc Note: nucleases Location: 4802372-480251 6 bp Feature: gene Location: 4803223-4805028 bp Ori: QJR78450.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4803487-4804309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4803487-4804309 bp Feature: domain Description: Intron_maturas2 Location: 4804387-4804717 bp Feature: domain Description: Intron_maturas2 Location: 4804387-480471 7 bp Feature: domain Description: HNHc Note: nucleases Location: 4804861-4805005 bp Feature: domain Description: HNHc Note: nucleases Location: 4804861 -4805005 bp Feature: gene Location: 4805594-4806583 bp Feature: domain Description: YWFCY Location: 4805600-4805777 bp Feature: domain Description: YWFCY Location: 4805600-4805777 bp Feature: gene Location: 4806620-4807867 bp Ori: QJR78451.1 Feature: domain Description: Relaxase Location: 4806740-4807265 bp Feature: domain Description: Relaxase Location: 4806740-4807265 bp Feature: domain Description: Relaxase Location: 4807427-4807649 bp Feature: domain Description: Relaxase Location: 4807427-4807649 bp Feature: gene Location: 4811424-4811753 bp Ori: QJR78458.1 Feature: domain Description: DUF4133 Location: 4811439-4811709 bp Feature: domain Description: DUF41 33 Location: 481 1 439-481 1 709 bp Feature: gene Location: 4811750-4813822 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 4811753-4813823 bp Feature: domain Description: Bac_Flav_CT_G Location: 481 1 753-481 3823 bp Feature: gene Location: 4814396-4816207 bp Ori: QJR78459.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4814660-4815482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 4660-481 5482 bp Feature: domain Description: Intron_maturas2 Location: 4815554-4815884 bp Feature: domain Description: Intron_maturas2 Location: 481 5554-481 5884 bp Feature: domain Description: HNHc Note: nucleases Location: 4816028-4816178 bp Feature: domain Description: HNHc Note: nucleases Location: 481 6028-481 61 78 bp Feature: gene Location: 4816315-4816764 bp Feature: domain Description: Bac_Flav_CT_G Location: 4816318-4816729 bp Feature: domain Description: Bac_Flav_CT_G Location: 481 631 8-481 6729 bp Feature: gene Location: 4816761-4817129 bp Ori: QJR78460.1 Feature: domain Description: DUF3876 Location: 4816842-4817112 bp Feature: domain Description: DUF3876 Location: 481 6842-481 71 1 2 bp Feature: gene Location: 5399961-5400575 bp Feature: gene Location: 5400607-5401032 bp Feature: domain Description: Bac_Flav_CT_G Location: 5400610-5401021 bp Feature: domain Description: Bac_Flav_CT_G Location: 540061 0-5401 021 bp Feature: gene Location: 5401140-5402951 bp Ori: QJR78925.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5401404-5402226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5401 404-5402226 bp Feature: domain Description: Intron_maturas2 Location: 5402298-5402628 bp Feature: domain Description: Intron_maturas2 Location: 5402298-5402628 bp Feature: domain Description: HNHc Note: nucleases Location: 5402772-5402922 bp Feature: domain Description: HNHc Note: nucleases Location: 5402772-5402922 bp Feature: gene Location: 5403525-5405594 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 5403528-5405595 bp Feature: domain Description: Bac_Flav_CT_G Location: 5403528-5405595 bp Feature: gene Location: 5405591-5405923 bp Ori: QJR78926.1 Feature: domain Description: DUF4133 Location: 5405609-5405879 bp Feature: domain Description: DUF41 33 Location: 5405609-5405879 bp Feature: gene Location: 5411984-5413240 bp Ori: QJR78935.1 Feature: domain Description: Relaxase Location: 5412152-5412473 bp Feature: domain Description: Relaxase Location: 541 21 52-541 2473 bp Feature: domain Description: Relaxase Location: 5412794-5413028 bp Feature: domain Description: Relaxase Location: 541 2794-541 3028 bp Feature: gene Location: 5413274-5414263 bp Feature: domain Description: YWFCY Location: 5413280-5413457 bp Feature: domain Description: YWFCY Location: 541 3280-541 3457 bp Feature: gene Location: 5414829-5416634 bp Ori: QJR78936.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5415093-5415915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 5093-541 591 5 bp Feature: domain Description: Intron_maturas2 Location: 5415993-5416323 bp Feature: domain Description: Intron_maturas2 Location: 541 5993-541 6323 bp Feature: domain Description: HNHc Note: nucleases Location: 5416467-5416611 bp Feature: domain Description: HNHc Note: nucleases Location: 541 6467-541 661 1 bp Feature: gene Location: 5416621-5417793 bp Ori: QJR78937.1 Feature: domain Description: TraG-D_C Location: 5417146-5417476 bp Feature: domain Description: TraG-D_C Location: 541 71 46-541 7476 bp Feature: gene Location: 5418011-5418502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_26 (pfam13443), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SMC_prok_B (TIGR02168), DUF4326 (pfam14216), TraG-D_C (pfam12696), YWFCY (pfam14293), Relaxase (pfam03432)
MobC (pfam05713), Toprim_2 (pfam13155), COG3378 (Phage- or plasmid-associated DNA primase ), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-UG8, RVT-UG3, HTH_17 (pfam12728), DUF4133 (pfam13571)
DUF3876 (pfam12992)