myRT

myRT report for GCA_013010255.1_ASM1301025v1

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Seq: CP046427.1 Bacteroides dorei strain JR04 chromosome, complete genome (5575489 bp)
Overview 1 RT 1: 414510-418447 bp 2 RT 2: 2038373-2044395 bp 3 RT 3: 2569751-2572947 bp 4 RT 4: 3619766-3625107 bp Neighborhood of RT #1 [414510, 418447] RVT-DGRs Neighborhood of RT #2 [2038373, 2044406] AAA_25 RVT-GII Intron_maturas2 Toprim_2 COG2865 Neighborhood of RT #3 [2569751, 2572947] Gp49 HTH_XRE RVT-DGRs Neighborhood of RT #4 [3619766, 3629228] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 414510-414890 bp Feature: gene Location: 414887-415315 bp Feature: gene Location: 415278-416465 bp Ori: QJR58000.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 415611-416238 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41 561 1 -41 6238 bp Feature: gene Location: 416798-418159 bp Feature: gene Location: 418169-418447 bp Feature: gene Location: 2038373-2039461 bp Ori: QJR59279.1 Feature: domain Description: AAA_25 Location: 2038523-2038988 bp Feature: domain Description: AAA_25 Location: 2038523-2038988 bp Feature: gene Location: 2039525-2039707 bp Feature: gene Location: 2040255-2042063 bp Ori: QJR59281.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2040519-2041341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204051 9-2041 341 bp Feature: domain Description: Intron_maturas2 Location: 2041410-2041719 bp Feature: domain Description: Intron_maturas2 Location: 2041 41 0-2041 71 9 bp Feature: gene Location: 2042068-2042889 bp Ori: QJR61954.1 Feature: domain Description: Toprim_2 Location: 2042587-2042866 bp Feature: domain Description: Toprim_2 Location: 2042587-2042866 bp Feature: gene Location: 2042970-2044406 bp Ori: QJR59282.1 Feature: domain Description: COG2865 Location: 2042973-2044395 bp Feature: domain Description: COG2865 Location: 2042973-2044395 bp Feature: gene Location: 2569751-2570095 bp Ori: QJR59669.1 Feature: domain Description: Gp49 Location: 2569805-2570066 bp Feature: domain Description: Gp49 Location: 2569805-2570066 bp Feature: gene Location: 2570100-2570411 bp Ori: QJR59670.1 Feature: domain Description: HTH_XRE Location: 2570214-2570370 bp Feature: domain Description: HTH_XRE Location: 257021 4-2570370 bp Feature: gene Location: 2570663-2572153 bp Ori: QJR59671.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2571056-2571653 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2571 056-2571 653 bp Feature: gene Location: 2572222-2572704 bp Feature: gene Location: 2572711-2572947 bp Feature: gene Location: 3619766-3620008 bp Feature: gene Location: 3620188-3620673 bp Feature: gene Location: 3620670-3621974 bp Ori: QJR60507.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3620883-3621477 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3620883-3621 477 bp Feature: gene Location: 3622300-3622494 bp Feature: gene Location: 3622491-3629228 bp Ori: QJR60509.1 Feature: domain Description: Laminin_G_3 Location: 3623952-3624030 bp Feature: domain Description: Laminin_G_3 Location: 3623952-3624030 bp Feature: domain Description: Laminin_G_3 Location: 3624681-3625107 bp Feature: domain Description: Laminin_G_3 Location: 3624681 -36251 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), COG2865 (Predicted transcriptional regulator, contains HTH domain ), Gp49 (pfam05973), HTH_XRE (smart00530), Laminin_G_3 (pfam13385)