myRT

myRT report for GCA_013085025.1_ASM1308502v1

Download annotations/find similar RTs

Seq: CP053247.1 Escherichia coli strain SCU-482 chromosome, complete genome (5152539 bp)
Overview 1 RT 1: 1173281-1178877 bp Neighborhood of RT #1 [1173281, 1178877] YhhI YhhI YhhI YhhI RVT-GII GIIM DDE_Tnp_1_assoc Feature: gene Location: 1173281-1174413 bp Feature: domain Description: YhhI Location: 1173284-1173650 bp Feature: domain Description: YhhI Location: 1 1 73284-1 1 73650 bp Feature: domain Description: YhhI Location: 1173707-1174064 bp Feature: domain Description: YhhI Location: 1 1 73707-1 1 74064 bp Feature: domain Description: YhhI Location: 1174082-1174343 bp Feature: domain Description: YhhI Location: 1 1 74082-1 1 74343 bp Feature: gene Location: 1174591-1174785 bp Feature: domain Description: YhhI Location: 1174600-1174771 bp Feature: domain Description: YhhI Location: 1 1 74600-1 1 74771 bp Feature: gene Location: 1174862-1176112 bp Ori: QJS58565.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1175066-1175723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 75066-1 1 75723 bp Feature: domain Description: GIIM Note: maturase Location: 1175804-1176026 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 75804-1 1 76026 bp Feature: gene Location: 1176644-1177602 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 1176647-1176812 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 1 1 76647-1 1 7681 2 bp Feature: gene Location: 1177915-1178877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808)

Seq: CP053248.1 Escherichia coli strain SCU-482 plasmid pSCU-482-1, complete sequence (145015 bp)
Overview 1 RT 1: 12900-17057 bp 2 RT 2: 26714-30142 bp Neighborhood of RT #1 [12900, 17057] InsE PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [26714, 30366] InsE RVT-GII PRK10173 Sigma70_r4_2 Sigma70_r4_2 Feature: gene Location: 12900-13304 bp Ori: QJS62120.1 Feature: domain Description: InsE Location: 12930-13266 bp Feature: domain Description: InsE Location: 12 930-132 66 bp Feature: gene Location: 13333-13716 bp Feature: domain Description: PHA02517 Location: 13339-13672 bp Feature: domain Description: PHA02 517 Location: 13339-13672 bp Feature: gene Location: 13806-15314 bp Ori: QJS62234.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14064-14796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14064-14796 bp Feature: domain Description: GIIM Note: maturase Location: 14871-15069 bp Feature: domain Description: GIIM Note: maturase Location: 14871-15069 bp Feature: gene Location: 15987-16726 bp Feature: domain Description: InsE Location: 15990-16326 bp Feature: domain Description: InsE Location: 15990-1632 6 bp Feature: gene Location: 16752-17057 bp Feature: gene Location: 26714-26974 bp Feature: gene Location: 27076-27815 bp Feature: domain Description: InsE Location: 27079-27415 bp Feature: domain Description: InsE Location: 2 7079-2 7415 bp Feature: gene Location: 28488-28976 bp Ori: QJS62235.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28746-28818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8746-2 8818 bp Feature: gene Location: 29126-29759 bp Feature: domain Description: PRK10173 Location: 29129-29567 bp Feature: domain Description: PRK10173 Location: 2 912 9-2 9567 bp Feature: gene Location: 29881-30366 bp Ori: QJS62129.1 Feature: domain Description: Sigma70_r4_2 Location: 29941-30013 bp Feature: domain Description: Sigma70_r4_2 Location: 2 9941-30013 bp Feature: domain Description: Sigma70_r4_2 Location: 30082-30142 bp Feature: domain Description: Sigma70_r4_2 Location: 30082 -30142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), Sigma70_r4_2 (pfam08281)