myRT

myRT report for GCA_013085865.1_ASM1308586v1

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Seq: CP053282.1 Escherichia coli strain SCU-308 plasmid pSCU-308-1, complete sequence (151546 bp)
Overview 1 RT 1: 8814-11130 bp Neighborhood of RT #1 [8814, 11130] YkfC RVT-GII Feature: gene Location: 8814-9080 bp Feature: gene Location: 9267-9446 bp Ori: QJT88245.1 Feature: domain Description: YkfC Location: 9273-9387 bp Feature: domain Description: YkfC Location: 9273-9387 bp Feature: gene Location: 9579-10019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9582-10011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9582-1 001 1 bp Feature: gene Location: 10047-10616 bp Feature: gene Location: 10719-11130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII

Seq: CP053281.1 Escherichia coli strain SCU-308 chromosome, complete genome (4982336 bp)
Overview 1 RT 1: 3123148-3127918 bp 2 RT 2: 4450647-4455741 bp 3 RT 3: 4483347-4486302 bp Neighborhood of RT #1 [3123148, 3127980] PHA02517 group_II_RT_mat RVT-GII GIIM InsE HTH_23 CE4_Ecf1_like_5s CE4_Ecf1_like_5s Neighborhood of RT #2 [4450647, 4455821] COG3547 PHA02517 RVT-GII GIIM PHA02517 PHA02517 Neighborhood of RT #3 [4483347, 4486343] DUF987 CbeA_antitoxin RVT-GII GIIM CbeA_antitoxin CbtA_toxin Feature: gene Location: 3123148-3123405 bp Feature: gene Location: 3123488-3123975 bp Feature: domain Description: PHA02517 Location: 3123491-3123662 bp Feature: domain Description: PHA02 517 Location: 312 3491-312 3662 bp Feature: gene Location: 3124056-3125561 bp Gene: ltrA Feature: domain Description: group_II_RT_mat Note: maturase Location: 3124146-3124356 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 312 4146-312 4356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3124938-3125043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 4938-312 5043 bp Feature: domain Description: GIIM Note: maturase Location: 3125118-3125316 bp Feature: domain Description: GIIM Note: maturase Location: 312 5118-312 5316 bp Feature: gene Location: 3126233-3126920 bp Feature: domain Description: InsE Location: 3126239-3126413 bp Feature: domain Description: InsE Location: 312 62 39-312 6413 bp Feature: domain Description: HTH_23 Location: 3126530-3126629 bp Feature: domain Description: HTH_2 3 Location: 312 6530-312 662 9 bp Feature: gene Location: 3127138-3127980 bp Ori: QJT88164.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 3127237-3127633 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 312 72 37-312 7633 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 3127639-3127918 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 312 7639-312 7918 bp Feature: gene Location: 4450647-4451723 bp Ori: QJT88222.1 Feature: domain Description: COG3547 Location: 4450686-4451607 bp Feature: domain Description: COG3547 Location: 4450686-4451607 bp Feature: gene Location: 4452005-4452184 bp Feature: domain Description: PHA02517 Location: 4452008-4452185 bp Feature: domain Description: PHA02 517 Location: 4452 008-4452 185 bp Feature: gene Location: 4452265-4453773 bp Ori: QJT88224.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4452523-4453255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4452 52 3-44532 55 bp Feature: domain Description: GIIM Note: maturase Location: 4453330-4453528 bp Feature: domain Description: GIIM Note: maturase Location: 4453330-445352 8 bp Feature: gene Location: 4454446-4454871 bp Feature: domain Description: PHA02517 Location: 4454536-4454872 bp Feature: domain Description: PHA02 517 Location: 4454536-4454872 bp Feature: gene Location: 4454880-4455821 bp Feature: domain Description: PHA02517 Location: 4454964-4455741 bp Feature: domain Description: PHA02 517 Location: 4454964-4455741 bp Feature: gene Location: 4483347-4483568 bp Ori: QJT87618.1 Feature: domain Description: DUF987 Location: 4483350-4483542 bp Feature: domain Description: DUF987 Location: 4483350-4483542 bp Feature: gene Location: 4483642-4483986 bp Ori: QJT87619.1 Feature: domain Description: CbeA_antitoxin Location: 4483693-4483939 bp Feature: domain Description: CbeA_antitoxin Location: 4483693-4483939 bp Feature: gene Location: 4484023-4485294 bp Ori: QJT87620.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4484260-4484917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44842 60-4484917 bp Feature: domain Description: GIIM Note: maturase Location: 4484998-4485220 bp Feature: domain Description: GIIM Note: maturase Location: 4484998-44852 2 0 bp Feature: gene Location: 4485793-4485876 bp Feature: domain Description: CbeA_antitoxin Location: 4485802-4485859 bp Feature: domain Description: CbeA_antitoxin Location: 4485802 -4485859 bp Feature: gene Location: 4485966-4486343 bp Ori: QJT87621.1 Gene: cbtA Feature: domain Description: CbtA_toxin Location: 4485969-4486302 bp Feature: domain Description: CbtA_toxin Location: 4485969-4486302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), InsE (COG2963), HTH_23 (pfam13384), CE4_Ecf1_like_5s (cd10969), COG3547 (Transposase ), DUF987 (pfam06174), CbeA_antitoxin (pfam06154)
CbtA_toxin (pfam06755)