myRT

myRT report for GCA_013112015.1_ASM1311201v1

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Seq: CP053228.1 Blautia producta strain SCSK chromosome, complete genome (5498201 bp)
Overview 1 RT 1: 145498-150732 bp 2 RT 2: 1405650-1409995 bp 3 RT 3: 1432547-1440129 bp 4 RT 4: 3304093-3308652 bp 5 RT 5: 3486503-3493070 bp 6 RT 6: 4252345-4256569 bp 7 RT 7: 4554731-4559287 bp 8 RT 8: 5014962-5021704 bp Neighborhood of RT #1 [145498, 150761] menH_SHCHC MarR RVT-GII GIIM ABC2_membrane CcmA Neighborhood of RT #2 [1405650, 1410033] MazF RVT-GII GIIM TlyC Neighborhood of RT #3 [1432547, 1440134] COG1033 COG1033 YhgE xxxLxxG_by_4 xxxLxxG_by_4 xxxLxxG_by_4 xxxLxxG_by_4 RVT-GII GIIM DUF3795 DUF2284 Neighborhood of RT #4 [3304093, 3308657] YesN YesN RVT-Retrons PRK09273 Neighborhood of RT #5 [3486503, 3493075] DDE_Tnp_1_6 AbiJ_NTD4 RVT-GII GIIM guaA FieF Neighborhood of RT #6 [4252345, 4256569] Maff2 RVT-GII HNHc Maff2 Neighborhood of RT #7 [4554731, 4559349] rplK rplA RVT-GII GIIM HATPase_AgrC-ComD-like xerC Neighborhood of RT #8 [5014962, 5021715] PRK02813 Cupin_2 AraC Glyco_hydro_39 RVT-GII Aes MelB Feature: gene Location: 145498-146232 bp Ori: QJU13126.1 Feature: domain Description: menH_SHCHC Location: 145531-145834 bp Feature: domain Description: menH_SHCHC Location: 1 45531 -1 45834 bp Feature: gene Location: 146245-146691 bp Ori: QJU13127.1 Feature: domain Description: MarR Location: 146329-146680 bp Feature: domain Description: MarR Location: 1 46329-1 46680 bp Feature: gene Location: 147373-148662 bp Ori: QJU13128.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147664-148297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 47664-1 48297 bp Feature: domain Description: GIIM Note: maturase Location: 148378-148597 bp Feature: domain Description: GIIM Note: maturase Location: 1 48378-1 48597 bp Feature: gene Location: 149056-149811 bp Ori: QJU13129.1 Feature: domain Description: ABC2_membrane Location: 149065-149695 bp Feature: domain Description: ABC2_membrane Location: 1 49065-1 49695 bp Feature: gene Location: 149808-150761 bp Ori: QJU17606.1 Feature: domain Description: CcmA Location: 149817-150732 bp Feature: domain Description: CcmA Location: 1 4981 7-1 50732 bp Feature: gene Location: 1405650-1406000 bp Ori: QJU14230.1 Feature: domain Description: MazF Location: 1405656-1405986 bp Feature: domain Description: MazF Location: 1 405656-1 405986 bp Feature: gene Location: 1405993-1406232 bp Feature: gene Location: 1406756-1408045 bp Ori: QJU14232.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1407047-1407680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 407047-1 407680 bp Feature: domain Description: GIIM Note: maturase Location: 1407761-1407980 bp Feature: domain Description: GIIM Note: maturase Location: 1 407761 -1 407980 bp Feature: gene Location: 1408300-1408440 bp Feature: gene Location: 1408654-1410033 bp Ori: QJU14234.1 Feature: domain Description: TlyC Location: 1408678-1409995 bp Feature: domain Description: TlyC Location: 1 408678-1 409995 bp Feature: gene Location: 1432547-1434655 bp Ori: QJU14258.1 Feature: domain Description: COG1033 Location: 1432559-1432793 bp Feature: domain Description: COG1 033 Location: 1 432559-1 432793 bp Feature: domain Description: COG1033 Location: 1432946-1434578 bp Feature: domain Description: COG1 033 Location: 1 432946-1 434578 bp Feature: gene Location: 1434652-1437363 bp Ori: QJU14259.1 Feature: domain Description: YhgE Location: 1435459-1435822 bp Feature: domain Description: YhgE Location: 1 435459-1 435822 bp Feature: domain Description: xxxLxxG_by_4 Location: 1436710-1436764 bp Feature: domain Description: xxxLxxG_by_4 Location: 1 43671 0-1 436764 bp Feature: domain Description: xxxLxxG_by_4 Location: 1436917-1436986 bp Feature: domain Description: xxxLxxG_by_4 Location: 1 43691 7-1 436986 bp Feature: domain Description: xxxLxxG_by_4 Location: 1437025-1437103 bp Feature: domain Description: xxxLxxG_by_4 Location: 1 437025-1 4371 03 bp Feature: domain Description: xxxLxxG_by_4 Location: 1437109-1437175 bp Feature: domain Description: xxxLxxG_by_4 Location: 1 4371 09-1 4371 75 bp Feature: gene Location: 1437948-1439237 bp Ori: QJU14260.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1438239-1438872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 438239-1 438872 bp Feature: domain Description: GIIM Note: maturase Location: 1438953-1439172 bp Feature: domain Description: GIIM Note: maturase Location: 1 438953-1 4391 72 bp Feature: gene Location: 1439383-1439517 bp Ori: QJU17686.1 Feature: domain Description: DUF3795 Location: 1439386-1439452 bp Feature: domain Description: DUF3795 Location: 1 439386-1 439452 bp Feature: gene Location: 1439598-1440134 bp Ori: QJU14261.1 Feature: domain Description: DUF2284 Location: 1439661-1440129 bp Feature: domain Description: DUF2284 Location: 1 439661 -1 4401 29 bp Feature: gene Location: 3304093-3305616 bp Ori: QJU15836.1 Feature: domain Description: YesN Location: 3304096-3304459 bp Feature: domain Description: YesN Location: 3304096-3304459 bp Feature: domain Description: YesN Location: 3305023-3305608 bp Feature: domain Description: YesN Location: 3305023-3305608 bp Feature: gene Location: 3305674-3305850 bp Feature: gene Location: 3306107-3307129 bp Ori: QJU15838.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3306272-3306827 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3306272-3306827 bp Feature: gene Location: 3307163-3307948 bp Feature: gene Location: 3308019-3308657 bp Ori: QJU15840.1 Feature: domain Description: PRK09273 Location: 3308022-3308652 bp Feature: domain Description: PRK09273 Location: 3308022-3308652 bp Feature: gene Location: 3486503-3486847 bp Ori: QJU17801.1 Feature: domain Description: DDE_Tnp_1_6 Location: 3486515-3486833 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 348651 5-3486833 bp Feature: gene Location: 3487841-3488476 bp Ori: QJU15979.1 Feature: domain Description: AbiJ_NTD4 Location: 3487859-3488078 bp Feature: domain Description: AbiJ_NTD4 Location: 3487859-3488078 bp Feature: gene Location: 3488599-3489888 bp Ori: QJU15980.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3488890-3489523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3488890-3489523 bp Feature: domain Description: GIIM Note: maturase Location: 3489604-3489823 bp Feature: domain Description: GIIM Note: maturase Location: 3489604-3489823 bp Feature: gene Location: 3490464-3492008 bp Ori: QJU15981.1 Gene: guaA Feature: domain Description: guaA Location: 3490473-3492006 bp Feature: domain Description: guaA Location: 3490473-3492006 bp Feature: gene Location: 3492173-3493075 bp Ori: QJU15982.1 Feature: domain Description: FieF Location: 3492209-3493070 bp Feature: domain Description: FieF Location: 3492209-3493070 bp Feature: gene Location: 4252345-4252554 bp Feature: gene Location: 4252656-4252787 bp Ori: QJU16597.1 Feature: domain Description: Maff2 Location: 4252659-4252785 bp Feature: domain Description: Maff2 Location: 4252659-4252785 bp Feature: gene Location: 4253544-4255418 bp Ori: QJU16598.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4253871-4254609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4253871 -4254609 bp Feature: domain Description: HNHc Note: nucleases Location: 4255143-4255305 bp Feature: domain Description: HNHc Note: nucleases Location: 42551 43-4255305 bp Feature: gene Location: 4255577-4255675 bp Feature: domain Description: Maff2 Location: 4255580-4255670 bp Feature: domain Description: Maff2 Location: 4255580-4255670 bp Feature: gene Location: 4255697-4256569 bp Feature: gene Location: 4554731-4555156 bp Ori: QJU16858.1 Gene: rplK Feature: domain Description: rplK Location: 4554734-4555154 bp Feature: domain Description: rplK Location: 4554734-45551 54 bp Feature: gene Location: 4555236-4555931 bp Ori: QJU16859.1 Gene: rplA Feature: domain Description: rplA Location: 4555239-4555923 bp Feature: domain Description: rplA Location: 4555239-4555923 bp Feature: gene Location: 4556512-4557801 bp Ori: QJU16860.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4556803-4557436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4556803-4557436 bp Feature: domain Description: GIIM Note: maturase Location: 4557517-4557736 bp Feature: domain Description: GIIM Note: maturase Location: 455751 7-4557736 bp Feature: gene Location: 4557942-4558223 bp Ori: QJU16861.1 Feature: domain Description: HATPase_AgrC-ComD-like Location: 4557975-4558167 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 4557975-45581 67 bp Feature: gene Location: 4558510-4559349 bp Ori: QJU17865.1 Feature: domain Description: xerC Location: 4558528-4559287 bp Feature: domain Description: xerC Location: 4558528-4559287 bp Feature: gene Location: 5014962-5016230 bp Ori: QJU17204.1 Feature: domain Description: PRK02813 Location: 5014971-5016228 bp Feature: domain Description: PRK0281 3 Location: 501 4971 -501 6228 bp Feature: gene Location: 5016298-5018754 bp Ori: QJU17205.1 Feature: domain Description: Cupin_2 Location: 5016340-5016475 bp Feature: domain Description: Cupin_2 Location: 501 6340-501 6475 bp Feature: domain Description: AraC Location: 5016736-5017066 bp Feature: domain Description: AraC Location: 501 6736-501 7066 bp Feature: domain Description: Glyco_hydro_39 Location: 5017291-5018407 bp Feature: domain Description: Glyco_hydro_39 Location: 501 7291 -501 8407 bp Feature: gene Location: 5018825-5019232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5018828-5019233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 8828-501 9233 bp Feature: gene Location: 5019419-5020336 bp Ori: QJU17206.1 Feature: domain Description: Aes Location: 5019563-5020265 bp Feature: domain Description: Aes Location: 501 9563-5020265 bp Feature: gene Location: 5020366-5021715 bp Ori: QJU17207.1 Feature: domain Description: MelB Location: 5020372-5021704 bp Feature: domain Description: MelB Location: 5020372-5021 704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT menH_SHCHC (TIGR03695), MarR (pfam01047), RVT-GII, GIIM (pfam08388), ABC2_membrane (pfam01061), CcmA (COG4133), MazF (COG2337), TlyC (COG1253), COG1033 (Predicted exporter protein, RND superfamily ), YhgE (COG1511)
xxxLxxG_by_4 (TIGR03057), DUF3795 (pfam12675), DUF2284 (pfam10050), YesN (COG4753), RVT-Retrons, PRK09273 (hypothetical protein; Provisional), DDE_Tnp_1_6 (pfam13751), AbiJ_NTD4 (pfam18863), guaA (PRK00074), FieF (COG0053)
Maff2 (pfam12750), HNHc (smart00507), rplK (PRK00140), rplA (PRK05424), HATPase_AgrC-ComD-like (cd16935), xerC (PRK01287), PRK02813 (putative aminopeptidase 2; Provisional), Cupin_2 (pfam07883), AraC (COG2207), Glyco_hydro_39 (pfam01229)
Aes (COG0657), MelB (COG2211)