myRT

myRT report for GCA_013112035.1_ASM1311203v1

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Seq: CP053229.1 Enterocloster bolteae strain CBBP-2 chromosome, complete genome (6421589 bp)
Overview 1 RT 1: 369426-374582 bp 2 RT 2: 703394-708865 bp 3 RT 3: 1054687-1059791 bp 4 RT 4: 1074009-1078739 bp 5 RT 5: 1251421-1255307 bp 6 RT 6: 3110521-3121457 bp 7 RT 7: 5445360-5448180 bp 8 RT 8: 5533297-5538565 bp 9 RT 9: 5641445-5644253 bp 10 RT 10: 6400162-6405633 bp Neighborhood of RT #1 [369426, 374599] N6_Mtase HTH_24 RVT-GII LysR PRK11413 Neighborhood of RT #2 [703394, 708873] DUF3801 TraG_VirD4 RVT-GII VirD4 Maff2 Neighborhood of RT #3 [1054687, 1059826] VirD4 RVT-GII VirD4 DUF3801 Neighborhood of RT #4 [1074009, 1078750] UgpA UgpE RVT-Retrons NAT_SF YoaP spoVFB Neighborhood of RT #5 [1251421, 1255307] FGE-sulfatase Avd_like RVT-DGRs Neighborhood of RT #6 [3110521, 3121457] Putative_PNPOx COG3666 DDE_Tnp_1_6 RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII Neighborhood of RT #7 [5445360, 5448182] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Neighborhood of RT #8 [5533297, 5538579] VirD4 RVT-GII VirD4 DUF3801 Neighborhood of RT #9 [5641445, 5644267] Phage_XkdX RVT-DGRs Phage_holin_Dp1 Neighborhood of RT #10 [6400162, 6405641] DUF3801 TraG_VirD4 RVT-GII VirD4 Maff2 Feature: gene Location: 369426-369815 bp Ori: QJU17922.1 Feature: domain Description: N6_Mtase Location: 369462-369759 bp Feature: domain Description: N6_Mtase Location: 369462-369759 bp Feature: gene Location: 369970-370316 bp Feature: domain Description: HTH_24 Location: 370126-370234 bp Feature: domain Description: HTH_24 Location: 3701 26-370234 bp Feature: gene Location: 370554-370676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370557-370674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370557-370674 bp Feature: gene Location: 371047-371973 bp Ori: QJU18256.1 Feature: domain Description: LysR Location: 371050-371956 bp Feature: domain Description: LysR Location: 371 050-371 956 bp Feature: gene Location: 372329-374599 bp Ori: QJU18257.1 Feature: domain Description: PRK11413 Location: 372332-374582 bp Feature: domain Description: PRK1 1 41 3 Location: 372332-374582 bp Feature: gene Location: 703394-703894 bp Ori: QJU18519.1 Feature: domain Description: DUF3801 Location: 703463-703880 bp Feature: domain Description: DUF3801 Location: 703463-703880 bp Feature: gene Location: 703891-704424 bp Feature: domain Description: TraG_VirD4 Location: 704320-704422 bp Feature: domain Description: TraG_VirD4 Location: 704320-704422 bp Feature: gene Location: 705181-707028 bp Ori: QJU23371.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705481-706198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705481 -7061 98 bp Feature: gene Location: 707162-708436 bp Ori: QJU23372.1 Feature: domain Description: VirD4 Location: 707252-708335 bp Feature: domain Description: VirD4 Location: 707252-708335 bp Feature: gene Location: 708655-708873 bp Ori: QJU18520.1 Feature: domain Description: Maff2 Location: 708658-708865 bp Feature: domain Description: Maff2 Location: 708658-708865 bp Feature: gene Location: 1054687-1054857 bp Feature: gene Location: 1054850-1056118 bp Feature: domain Description: VirD4 Location: 1054874-1055993 bp Feature: domain Description: VirD4 Location: 1 054874-1 055993 bp Feature: gene Location: 1056222-1058069 bp Ori: QJU23389.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1056522-1057239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 056522-1 057239 bp Feature: gene Location: 1058826-1059353 bp Feature: domain Description: VirD4 Location: 1059039-1059351 bp Feature: domain Description: VirD4 Location: 1 059039-1 059351 bp Feature: gene Location: 1059350-1059826 bp Ori: QJU18807.1 Feature: domain Description: DUF3801 Location: 1059413-1059791 bp Feature: domain Description: DUF3801 Location: 1 05941 3-1 059791 bp Feature: gene Location: 1074009-1074887 bp Ori: QJU18821.1 Feature: domain Description: UgpA Location: 1074027-1074873 bp Feature: domain Description: UgpA Location: 1 074027-1 074873 bp Feature: gene Location: 1074902-1075735 bp Ori: QJU18822.1 Feature: domain Description: UgpE Location: 1074917-1075730 bp Feature: domain Description: UgpE Location: 1 07491 7-1 075730 bp Feature: gene Location: 1076157-1077164 bp Ori: QJU18823.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1076322-1076877 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 076322-1 076877 bp Feature: gene Location: 1077176-1077919 bp Ori: QJU18824.1 Feature: domain Description: NAT_SF Location: 1077383-1077500 bp Feature: domain Description: NAT_SF Location: 1 077383-1 077500 bp Feature: domain Description: YoaP Location: 1077782-1077908 bp Feature: domain Description: YoaP Location: 1 077782-1 077908 bp Feature: gene Location: 1078166-1078750 bp Ori: QJU18825.1 Feature: domain Description: spoVFB Location: 1078169-1078739 bp Feature: domain Description: spoVFB Location: 1 0781 69-1 078739 bp Feature: gene Location: 1251421-1252473 bp Ori: QJU19020.1 Feature: domain Description: FGE-sulfatase Location: 1251655-1251988 bp Feature: domain Description: FGE-sulfatase Location: 1 251 655-1 251 988 bp Feature: gene Location: 1252555-1252965 bp Ori: QJU19021.1 Gene: avd Feature: domain Description: Avd_like Location: 1252636-1252954 bp Feature: domain Description: Avd_like Location: 1 252636-1 252954 bp Feature: gene Location: 1253415-1254566 bp Ori: QJU19022.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1253625-1254285 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 253625-1 254285 bp Feature: gene Location: 1254496-1254927 bp Feature: gene Location: 1254942-1255307 bp Feature: gene Location: 3110521-3110940 bp Ori: QJU20529.1 Feature: domain Description: Putative_PNPOx Location: 3110536-3110770 bp Feature: domain Description: Putative_PNPOx Location: 31 1 0536-31 1 0770 bp Feature: gene Location: 3111351-3112754 bp Feature: domain Description: COG3666 Location: 3111378-3111810 bp Feature: domain Description: COG3666 Location: 31 1 1 378-31 1 1 81 0 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3112362-3112713 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 31 1 2362-31 1 271 3 bp Feature: gene Location: 3112857-3113519 bp Ori: QJU20530.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3112860-3113067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 2860-31 1 3067 bp Feature: domain Description: GIIM Note: maturase Location: 3113127-3113346 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 31 27-31 1 3346 bp Feature: gene Location: 3113690-3114925 bp Ori: QJU20531.1 Feature: domain Description: Phage_int_SAM_1 Location: 3114062-3114278 bp Feature: domain Description: Phage_int_SAM_1 Location: 31 1 4062-31 1 4278 bp Feature: domain Description: INT_RitA_C_like Location: 3114359-3114890 bp Feature: domain Description: INT_RitA_C_like Location: 31 1 4359-31 1 4890 bp Feature: gene Location: 3114918-3115898 bp Ori: QJU20532.1 Feature: domain Description: INT_RitB_C_like Location: 3115254-3115833 bp Feature: domain Description: INT_RitB_C_like Location: 31 1 5254-31 1 5833 bp Feature: gene Location: 3115885-3116895 bp Ori: QJU20533.1 Feature: domain Description: Phage_int_SAM_1 Location: 3115930-3116182 bp Feature: domain Description: Phage_int_SAM_1 Location: 31 1 5930-31 1 61 82 bp Feature: domain Description: INT_RitC_C_like Location: 3116263-3116815 bp Feature: domain Description: INT_RitC_C_like Location: 31 1 6263-31 1 681 5 bp Feature: gene Location: 3117006-3117608 bp Ori: QJU20534.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3117216-3117597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 721 6-31 1 7597 bp Feature: gene Location: 3118373-3120397 bp Feature: gene Location: 3120529-3121457 bp Feature: gene Location: 5445360-5445569 bp Ori: QJU22471.1 Feature: domain Description: Phage_holin_Dp1 Location: 5445369-5445555 bp Feature: domain Description: Phage_holin_Dp1 Location: 5445369-5445555 bp Feature: gene Location: 5445583-5446137 bp Feature: gene Location: 5446151-5447347 bp Ori: QJU22473.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5446346-5447066 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5446346-5447066 bp Feature: gene Location: 5447551-5448042 bp Feature: gene Location: 5448042-5448182 bp Ori: QJU22475.1 Feature: domain Description: Phage_XkdX Location: 5448063-5448180 bp Feature: domain Description: Phage_XkdX Location: 5448063-54481 80 bp Feature: gene Location: 5533297-5533617 bp Feature: gene Location: 5533630-5534850 bp Feature: domain Description: VirD4 Location: 5533645-5534746 bp Feature: domain Description: VirD4 Location: 5533645-5534746 bp Feature: gene Location: 5534963-5536810 bp Ori: QJU23603.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5535263-5535980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5535263-5535980 bp Feature: gene Location: 5537567-5538097 bp Feature: domain Description: VirD4 Location: 5537810-5538095 bp Feature: domain Description: VirD4 Location: 553781 0-5538095 bp Feature: gene Location: 5538097-5538579 bp Ori: QJU22568.1 Feature: domain Description: DUF3801 Location: 5538166-5538565 bp Feature: domain Description: DUF3801 Location: 55381 66-5538565 bp Feature: gene Location: 5641445-5641585 bp Ori: QJU22688.1 Feature: domain Description: Phage_XkdX Location: 5641466-5641583 bp Feature: domain Description: Phage_XkdX Location: 5641 466-5641 583 bp Feature: gene Location: 5641585-5642076 bp Feature: gene Location: 5642280-5643476 bp Ori: QJU22690.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5642475-5643195 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5642475-56431 95 bp Feature: gene Location: 5643490-5644044 bp Feature: gene Location: 5644058-5644267 bp Ori: QJU22692.1 Feature: domain Description: Phage_holin_Dp1 Location: 5644067-5644253 bp Feature: domain Description: Phage_holin_Dp1 Location: 5644067-5644253 bp Feature: gene Location: 6400162-6400662 bp Ori: QJU23322.1 Feature: domain Description: DUF3801 Location: 6400231-6400648 bp Feature: domain Description: DUF3801 Location: 6400231 -6400648 bp Feature: gene Location: 6400659-6401192 bp Feature: domain Description: TraG_VirD4 Location: 6401088-6401190 bp Feature: domain Description: TraG_VirD4 Location: 6401 088-6401 1 90 bp Feature: gene Location: 6401949-6403796 bp Ori: QJU23640.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6402249-6402966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6402249-6402966 bp Feature: gene Location: 6403930-6405204 bp Ori: QJU23641.1 Feature: domain Description: VirD4 Location: 6404020-6405103 bp Feature: domain Description: VirD4 Location: 6404020-64051 03 bp Feature: gene Location: 6405423-6405641 bp Ori: QJU23323.1 Feature: domain Description: Maff2 Location: 6405426-6405633 bp Feature: domain Description: Maff2 Location: 6405426-6405633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), HTH_24 (pfam13412), RVT-GII, LysR (COG0583), PRK11413 (putative hydratase; Provisional), DUF3801 (pfam12687), TraG_VirD4, VirD4 (COG3505), Maff2 (pfam12750), UgpA (COG1175)
UgpE (COG0395), RVT-Retrons, NAT_SF (cl17182), YoaP (pfam14268), spoVFB (PRK08305), FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, Putative_PNPOx (pfam01243), COG3666 (Transposase )
DDE_Tnp_1_6 (pfam13751), GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182), Phage_holin_Dp1 (pfam16938), Phage_XkdX (pfam09693)