myRT

myRT report for GCA_013112375.1_ASM1311237v1

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Seq: CP053289.1 Bacillus cereus strain WPySW2 chromosome, complete genome (5328644 bp)
Overview 1 RT 1: 1556617-1561759 bp 2 RT 2: 4393950-4397884 bp Neighborhood of RT #1 [1556617, 1561845] caa3_CtaG amiF RVT-GII HNHc amiF YugN Neighborhood of RT #2 [4393950, 4397889] RVT_N RVT-GII GIIM RimL YjcZ_2 Feature: gene Location: 1556617-1557522 bp Ori: QJU33779.1 Gene: ctaG Feature: domain Description: caa3_CtaG Location: 1556626-1557466 bp Feature: domain Description: caa3_CtaG Location: 1 556626-1 557466 bp Feature: gene Location: 1557756-1558127 bp Gene: amiF Feature: domain Description: amiF Location: 1557759-1558128 bp Feature: domain Description: amiF Location: 1 557759-1 5581 28 bp Feature: gene Location: 1558861-1560693 bp Ori: QJU33780.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1559161-1559866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5591 61 -1 559866 bp Feature: domain Description: HNHc Note: nucleases Location: 1560445-1560577 bp Feature: domain Description: HNHc Note: nucleases Location: 1 560445-1 560577 bp Feature: gene Location: 1560810-1561433 bp Feature: domain Description: amiF Location: 1560813-1561428 bp Feature: domain Description: amiF Location: 1 56081 3-1 561 428 bp Feature: gene Location: 1561480-1561845 bp Ori: QJU33781.1 Feature: domain Description: YugN Location: 1561498-1561759 bp Feature: domain Description: YugN Location: 1 561 498-1 561 759 bp Feature: gene Location: 4393950-4394273 bp Feature: gene Location: 4394323-4394601 bp Feature: gene Location: 4394819-4396465 bp Ori: QJU36465.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4394861-4395098 bp Feature: domain Description: RVT_N Location: 4394861 -4395098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4395152-4395812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43951 52-439581 2 bp Feature: domain Description: GIIM Note: maturase Location: 4395881-4396112 bp Feature: domain Description: GIIM Note: maturase Location: 4395881 -43961 1 2 bp Feature: gene Location: 4397104-4397649 bp Ori: QJU36466.1 Feature: domain Description: RimL Location: 4397122-4397635 bp Feature: domain Description: RimL Location: 43971 22-4397635 bp Feature: gene Location: 4397782-4397889 bp Ori: QJU36467.1 Feature: domain Description: YjcZ_2 Location: 4397815-4397884 bp Feature: domain Description: YjcZ_2 Location: 439781 5-4397884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT caa3_CtaG (TIGR02737), amiF (PRK13287), RVT-GII, HNHc (smart00507), YugN (pfam08868), RVT_N (pfam13655), GIIM (pfam08388), RimL (COG1670), YjcZ_2

Seq: CP053290.1 Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence (421688 bp)
Overview 1 RT 1: 47951-59567 bp 2 RT 2: 153815-163701 bp 3 RT 3: 168222-173031 bp 4 RT 4: 177051-186166 bp 5 RT 5: 255129-264835 bp Neighborhood of RT #1 [47951, 59567] HELICc RVT-GII HNHc DEXDc MTS RVT-GII HNHc Neighborhood of RT #2 [153815, 163701] PRK06850 HEPN RVT-GII NT_KNTase_like E1_enzyme_family RVT-GII Intron_maturas2 HNHc E1_enzyme_family Neighborhood of RT #3 [168222, 173036] beta_clamp RVT-GII COG4712 Neighborhood of RT #4 [177051, 186166] rpsA nuc_hydro RVT_N RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma Neighborhood of RT #5 [255129, 264835] TraC-F-type RVT-GII HNHc TraC-F-type Feature: gene Location: 47951-48664 bp Feature: gene Location: 48681-50363 bp Ori: QJU37497.1 Feature: domain Description: HELICc Location: 49347-49746 bp Feature: domain Description: HELICc Location: 49347-49746 bp Feature: gene Location: 50424-52223 bp Ori: QJU37498.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50727-51429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5072 7-5142 9 bp Feature: domain Description: HNHc Note: nucleases Location: 51954-52104 bp Feature: domain Description: HNHc Note: nucleases Location: 51954-52 104 bp Feature: gene Location: 52924-54603 bp Ori: QJU37499.1 Feature: domain Description: DEXDc Location: 53704-54577 bp Feature: domain Description: DEXDc Location: 53704-54577 bp Feature: gene Location: 54675-54902 bp Feature: gene Location: 54918-56039 bp Ori: QJU37501.1 Feature: domain Description: MTS Location: 55014-55377 bp Feature: domain Description: MTS Location: 55014-55377 bp Feature: gene Location: 56184-58112 bp Ori: QJU37502.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56505-57240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56505-572 40 bp Feature: domain Description: HNHc Note: nucleases Location: 57831-57996 bp Feature: domain Description: HNHc Note: nucleases Location: 57831-57996 bp Feature: gene Location: 58995-59132 bp Feature: gene Location: 59154-59567 bp Feature: gene Location: 153815-155587 bp Ori: QJU37565.1 Feature: domain Description: PRK06850 Location: 153830-155060 bp Feature: domain Description: PRK06850 Location: 153830-155060 bp Feature: gene Location: 155712-156155 bp Ori: QJU37566.1 Feature: domain Description: HEPN Location: 155766-156114 bp Feature: domain Description: HEPN Location: 155766-156114 bp Feature: gene Location: 156301-158232 bp Ori: QJU37567.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156622-157357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15662 2 -157357 bp Feature: gene Location: 158991-159389 bp Ori: QJU37568.1 Feature: domain Description: NT_KNTase_like Location: 159072-159366 bp Feature: domain Description: NT_KNTase_like Location: 159072 -159366 bp Feature: gene Location: 159411-159782 bp Feature: gene Location: 159802-160479 bp Feature: domain Description: E1_enzyme_family Location: 159805-160321 bp Feature: domain Description: E1_enzyme_family Location: 159805-16032 1 bp Feature: gene Location: 160596-162536 bp Ori: QJU37570.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160926-161763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16092 6-161763 bp Feature: domain Description: Intron_maturas2 Location: 161901-162192 bp Feature: domain Description: Intron_maturas2 Location: 161901-162 192 bp Feature: domain Description: HNHc Note: nucleases Location: 162324-162483 bp Feature: domain Description: HNHc Note: nucleases Location: 162 32 4-162 483 bp Feature: gene Location: 163105-163287 bp Ori: QJU37571.1 Feature: domain Description: E1_enzyme_family Location: 163153-163273 bp Feature: domain Description: E1_enzyme_family Location: 163153-1632 73 bp Feature: gene Location: 163300-163701 bp Feature: gene Location: 168222-169334 bp Ori: QJU37579.1 Gene: dnaN Feature: domain Description: beta_clamp Location: 168225-169329 bp Feature: domain Description: beta_clamp Location: 1682 2 5-16932 9 bp Feature: gene Location: 169415-169942 bp Feature: gene Location: 170020-171921 bp Ori: QJU37581.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170338-171040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170338-171040 bp Feature: gene Location: 172116-172256 bp Feature: gene Location: 172680-173036 bp Ori: QJU37583.1 Feature: domain Description: COG4712 Location: 172689-173031 bp Feature: domain Description: COG4712 Location: 172 689-173031 bp Feature: gene Location: 177051-178034 bp Ori: QJU37589.1 Feature: domain Description: rpsA Location: 177318-177855 bp Feature: domain Description: rpsA Location: 177318-177855 bp Feature: gene Location: 178649-179599 bp Ori: QJU37590.1 Feature: domain Description: nuc_hydro Location: 178664-179570 bp Feature: domain Description: nuc_hydro Location: 178664-179570 bp Feature: gene Location: 180319-181965 bp Ori: QJU37591.1 Gene: ltrA Feature: domain Description: RVT_N Location: 180361-180598 bp Feature: domain Description: RVT_N Location: 180361-180598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180652-181312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180652 -181312 bp Feature: domain Description: GIIM Note: maturase Location: 181381-181612 bp Feature: domain Description: GIIM Note: maturase Location: 181381-181612 bp Feature: gene Location: 182178-185678 bp Ori: QJU37592.1 Feature: domain Description: TraG-D_C Location: 183795-184155 bp Feature: domain Description: TraG-D_C Location: 183795-184155 bp Feature: domain Description: Ftsk_gamma Location: 184563-184740 bp Feature: domain Description: Ftsk_gamma Location: 184563-184740 bp Feature: domain Description: Ftsk_gamma Location: 184872-185007 bp Feature: domain Description: Ftsk_gamma Location: 184872 -185007 bp Feature: gene Location: 185696-186166 bp Feature: gene Location: 255129-256043 bp Feature: gene Location: 256046-257017 bp Ori: QJU37662.1 Feature: domain Description: TraC-F-type Location: 256466-256940 bp Feature: domain Description: TraC-F-type Location: 2 56466-2 56940 bp Feature: gene Location: 257733-259565 bp Ori: QJU37663.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258033-258738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 58033-2 58738 bp Feature: domain Description: HNHc Note: nucleases Location: 259317-259449 bp Feature: domain Description: HNHc Note: nucleases Location: 2 59317-2 59449 bp Feature: gene Location: 259880-260824 bp Ori: QJU37803.1 Feature: domain Description: TraC-F-type Location: 259889-260663 bp Feature: domain Description: TraC-F-type Location: 2 59889-2 60663 bp Feature: gene Location: 260855-264835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HELICc (smart00490), RVT-GII, HNHc (smart00507), DEXDc (smart00487), MTS (pfam05175), PRK06850 (hypothetical protein; Provisional), HEPN (smart00748), NT_KNTase_like (cd05403), E1_enzyme_family (cl22428), Intron_maturas2 (pfam01348)
beta_clamp (cl29549), COG4712 (Uncharacterized protein ), rpsA (TIGR00717), nuc_hydro (cl00226), RVT_N (pfam13655), GIIM (pfam08388), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), TraC-F-type (TIGR02746)