myRT

myRT report for GCA_013112395.1_ASM1311239v1

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Seq: CP053286.1 Serratia marcescens strain FZSF02 chromosome, complete genome (5407775 bp)
Overview 1 RT 1: 4550713-4555515 bp 2 RT 2: 5066522-5070950 bp 3 RT 3: 5075315-5079522 bp Neighborhood of RT #1 [4550713, 4555547] PRK09183 InsE InsE RVT-UG4 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #2 [5066522, 5070952] Shigella_OspC RVT-GII GIIM Rve SipD_IpaD_SspD Neighborhood of RT #3 [5075315, 5079524] RVT-UG4 FimA FimA Feature: gene Location: 4550713-4551504 bp Ori: QJU41816.1 Feature: domain Description: PRK09183 Location: 4550722-4551484 bp Feature: domain Description: PRK091 83 Location: 4550722-4551 484 bp Feature: gene Location: 4551569-4552111 bp Feature: domain Description: InsE Location: 4551608-4551782 bp Feature: domain Description: InsE Location: 4551 608-4551 782 bp Feature: domain Description: InsE Location: 4551908-4552007 bp Feature: domain Description: InsE Location: 4551 908-4552007 bp Feature: gene Location: 4553004-4553513 bp Ori: QJU41817.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4553007-4553301 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4553007-4553301 bp Feature: gene Location: 4553574-4555166 bp Ori: QJU41818.1 Feature: domain Description: LZ_Tnp_IS66 Location: 4553736-4553943 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4553736-4553943 bp Feature: domain Description: zf-IS66 Location: 4553967-4554099 bp Feature: domain Description: zf-IS66 Location: 4553967-4554099 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4554144-4555011 bp Feature: domain Description: DDE_Tnp_IS66 Location: 45541 44-455501 1 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4555035-4555143 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4555035-45551 43 bp Feature: gene Location: 4555197-4555547 bp Ori: QJU41819.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 4555224-4555515 bp Feature: domain Description: TnpB_IS66 Location: 4555224-455551 5 bp Feature: gene Location: 5066522-5066708 bp Feature: gene Location: 5066853-5068154 bp Ori: QJU42276.1 Feature: domain Description: Shigella_OspC Location: 5067414-5067990 bp Feature: domain Description: Shigella_OspC Location: 506741 4-5067990 bp Feature: gene Location: 5068391-5069083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5068397-5068706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5068397-5068706 bp Feature: domain Description: GIIM Note: maturase Location: 5068781-5068988 bp Feature: domain Description: GIIM Note: maturase Location: 5068781 -5068988 bp Feature: gene Location: 5069181-5069327 bp Feature: domain Description: Rve Location: 5069187-5069328 bp Feature: domain Description: Rve Location: 50691 87-5069328 bp Feature: gene Location: 5069510-5070952 bp Ori: QJU42277.1 Feature: domain Description: SipD_IpaD_SspD Location: 5070383-5070950 bp Feature: domain Description: SipD_IpaD_SspD Location: 5070383-5070950 bp Feature: gene Location: 5075315-5076234 bp Feature: gene Location: 5076643-5077437 bp Feature: gene Location: 5077444-5078430 bp Ori: QJU42283.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077780-5078218 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5077780-507821 8 bp Feature: gene Location: 5078453-5078992 bp Ori: QJU42284.1 Feature: domain Description: FimA Location: 5078522-5078990 bp Feature: domain Description: FimA Location: 5078522-5078990 bp Feature: gene Location: 5078997-5079524 bp Ori: QJU42285.1 Feature: domain Description: FimA Location: 5079033-5079522 bp Feature: domain Description: FimA Location: 5079033-5079522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), InsE (COG2963), RVT-UG4, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), Shigella_OspC (pfam06128), RVT-GII
GIIM (pfam08388), Rve (COG3316), SipD_IpaD_SspD (TIGR02553), FimA (pfam16970)