myRT

myRT report for GCA_013113735.1_ASM1311373v1

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Seq: CP053347.1 Sphingomonas sp. AP4-R1 plasmid unnamed1, complete sequence (22113 bp)
Overview 1 RT 1: 18129-22111 bp Neighborhood of RT #1 [18129, 22140] RVT-Retrons PinE Feature: gene Location: 18129-18716 bp Feature: gene Location: 18792-19085 bp Feature: gene Location: 19605-21320 bp Ori: QJU60965.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19734-20364 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9734-20364 bp Feature: gene Location: 21562-22140 bp Ori: QJU60966.1 Feature: domain Description: PinE Location: 21565-22111 bp Feature: domain Description: PinE Location: 21 565-221 1 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PinE (COG1961)

Seq: CP053346.1 Sphingomonas sp. AP4-R1 chromosome, complete genome (5252057 bp)
Overview 1 RT 1: 916099-922816 bp 2 RT 2: 4869587-4875492 bp 3 RT 3: 5124961-5130564 bp Neighborhood of RT #1 [916099, 922830] dnaG dnaG group_II_RT_mat RVT-UG6 nitrilase PRK09182 Neighborhood of RT #2 [4869587, 4877444] PRK09182 PRK05755 PRK14975 RVT-UG9 HsdR Neighborhood of RT #3 [5124961, 5130656] DUF488 RVT-UG7 PRK09054 Feature: gene Location: 916099-916515 bp Feature: gene Location: 916666-917754 bp Ori: QJU57137.1 Feature: domain Description: dnaG Location: 916813-917308 bp Feature: domain Description: dnaG Location: 916813-917308 bp Feature: domain Description: dnaG Location: 917464-917710 bp Feature: domain Description: dnaG Location: 917464-917710 bp Feature: gene Location: 917751-920960 bp Ori: QJU57138.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 917793-918120 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 917793-91812 0 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 918387-918828 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 918387-91882 8 bp Feature: gene Location: 920957-921862 bp Ori: QJU57139.1 Feature: domain Description: nitrilase Location: 921155-921746 bp Feature: domain Description: nitrilase Location: 92 1155-92 1746 bp Feature: gene Location: 921988-922830 bp Ori: QJU57140.1 Feature: domain Description: PRK09182 Location: 922000-922816 bp Feature: domain Description: PRK09182 Location: 92 2 000-92 2 816 bp Feature: gene Location: 4869587-4870504 bp Ori: QJU60066.1 Feature: domain Description: PRK09182 Location: 4869608-4870469 bp Feature: domain Description: PRK09182 Location: 4869608-4870469 bp Feature: gene Location: 4870609-4872159 bp Ori: QJU60067.1 Feature: domain Description: PRK05755 Location: 4870969-4871173 bp Feature: domain Description: PRK05755 Location: 4870969-4871173 bp Feature: domain Description: PRK14975 Location: 4871386-4872103 bp Feature: domain Description: PRK14975 Location: 4871386-4872 103 bp Feature: gene Location: 4872152-4873897 bp Ori: QJU60068.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 4872467-4873103 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 4872 467-4873103 bp Feature: gene Location: 4874219-4875025 bp Feature: gene Location: 4875084-4877444 bp Ori: QJU60070.1 Feature: domain Description: HsdR Location: 4875171-4875492 bp Feature: domain Description: HsdR Location: 4875171-4875492 bp Feature: gene Location: 5124961-5125410 bp Ori: QJU60260.1 Feature: domain Description: DUF488 Location: 5125006-5125357 bp Feature: domain Description: DUF488 Location: 512 5006-512 5357 bp Feature: gene Location: 5125566-5126318 bp Feature: gene Location: 5126308-5127936 bp Ori: QJU60262.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 5126746-5127142 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 512 6746-512 7142 bp Feature: gene Location: 5128166-5128627 bp Feature: gene Location: 5128764-5130656 bp Ori: QJU60264.1 Feature: domain Description: PRK09054 Location: 5128782-5130564 bp Feature: domain Description: PRK09054 Location: 512 8782 -5130564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), group_II_RT_mat (TIGR04416), RVT-UG6, nitrilase (cl11424), PRK09182 (DNA polymerase III subunit epsilon; Validated), PRK05755 (DNA polymerase I; Provisional), PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9, HsdR (COG4096), DUF488 (pfam04343)
RVT-UG7, PRK09054 (phosphogluconate dehydratase; Validated)