myRT

myRT report for GCA_013128195.1_ASM1312819v1

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Seq: CP053453.1 Gemmataceae bacterium strain PL17 plasmid pPL17-1, complete sequence (24691 bp)
Overview 1 RT 1: 1981-8627 bp Neighborhood of RT #1 [1981, 8845] KOG4378 ANAPC4_WD40 KOG4378 RVT-GII GIIM BcsQ nucleoid_noc Feature: gene Location: 1981-3666 bp Ori: QJX01335.1 Feature: domain Description: KOG4378 Location: 2983-3058 bp Feature: domain Description: KOG4378 Location: 2983-3058 bp Feature: domain Description: ANAPC4_WD40 Location: 3199-3307 bp Feature: domain Description: ANAPC4_WD40 Location: 31 99-3307 bp Feature: domain Description: KOG4378 Location: 3331-3514 bp Feature: domain Description: KOG4378 Location: 3331 -351 4 bp Feature: gene Location: 3973-4314 bp Feature: gene Location: 5138-6463 bp Ori: QJX01337.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5426-6086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5426-6086 bp Feature: domain Description: GIIM Note: maturase Location: 6155-6368 bp Feature: domain Description: GIIM Note: maturase Location: 61 55-6368 bp Feature: gene Location: 7002-7856 bp Ori: QJX01338.1 Feature: domain Description: BcsQ Location: 7023-7800 bp Feature: domain Description: BcsQ Location: 7023-7800 bp Feature: gene Location: 7853-8845 bp Ori: QJX01339.1 Feature: domain Description: nucleoid_noc Location: 8009-8627 bp Feature: domain Description: nucleoid_noc Location: 8009-8627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4378 (KOG4378, Nuclear protein COP1 ), ANAPC4_WD40 (pfam12894), RVT-GII, GIIM (pfam08388), BcsQ (COG1192), nucleoid_noc (TIGR04285)

Seq: CP053452.1 Gemmataceae bacterium strain PL17 chromosome, complete genome (9832708 bp)
Overview 1 RT 1: 694130-699642 bp 2 RT 2: 2363348-2368963 bp 3 RT 3: 3711025-3715963 bp 4 RT 4: 4731072-4738425 bp 5 RT 5: 6552438-6557213 bp 6 RT 6: 7735489-7741210 bp 7 RT 7: 8465806-8471635 bp 8 RT 8: 8745271-8751026 bp 9 RT 9: 8784055-8790375 bp Neighborhood of RT #1 [694130, 699642] RVT-CRISPR-like GATase1_PfpI_2 Neighborhood of RT #2 [2363348, 2369271] RVT-CRISPR-like rpt_mate_G_obs LRR_RI LRR_RI AAA_25 Neighborhood of RT #3 [3711025, 3715963] HTH_23 HTH_33 DDE_3 RVT-GII GIIM Neighborhood of RT #4 [4731072, 4738430] TPR Peptidase_S9 RVT-GII MJ0042_CXXC tRNA_anti-like tRNA_anti-like tRNA_anti-like PLN02470 Neighborhood of RT #5 [6552438, 6557275] RVT-GII RVT-GII GIIM TnpB_IS66 Neighborhood of RT #6 [7735489, 7741210] Pan_kinase trmE trmE RVT-Retrons SWIM Neighborhood of RT #7 [8465806, 8471635] RVT-Retrons PQQ_2 Neighborhood of RT #8 [8745271, 8751026] DUF1501 RVT-CRISPR-like Neighborhood of RT #9 [8784055, 8790375] ParA HEAT_2 HEAT HEAT_2 Aldo_ket_red RVT-Retrons pfam03781 Feature: gene Location: 694130-694339 bp Feature: gene Location: 694426-695817 bp Feature: gene Location: 696247-697554 bp Ori: QJW93130.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 696625-697183 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 69662 5-697183 bp Feature: gene Location: 698046-698819 bp Ori: QJW93131.1 Feature: domain Description: GATase1_PfpI_2 Location: 698163-698694 bp Feature: domain Description: GATase1_PfpI_2 Location: 698163-698694 bp Feature: gene Location: 698806-699642 bp Feature: gene Location: 2363348-2363734 bp Feature: gene Location: 2363823-2365262 bp Feature: gene Location: 2365679-2367025 bp Ori: QJW94608.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2366063-2366597 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 366063-2 366597 bp Feature: gene Location: 2367121-2368245 bp Ori: QJW94609.1 Feature: domain Description: rpt_mate_G_obs Location: 2367163-2367286 bp Feature: domain Description: rpt_mate_G_obs Location: 2 367163-2 3672 86 bp Feature: domain Description: LRR_RI Location: 2367757-2367979 bp Feature: domain Description: LRR_RI Location: 2 367757-2 367979 bp Feature: domain Description: LRR_RI Location: 2367997-2368141 bp Feature: domain Description: LRR_RI Location: 2 367997-2 368141 bp Feature: gene Location: 2368366-2369271 bp Ori: QJW94610.1 Feature: domain Description: AAA_25 Location: 2368417-2368963 bp Feature: domain Description: AAA_2 5 Location: 2 368417-2 368963 bp Feature: gene Location: 3711025-3711189 bp Feature: gene Location: 3711247-3712293 bp Ori: QJW95883.1 Feature: domain Description: HTH_23 Location: 3711304-3711433 bp Feature: domain Description: HTH_2 3 Location: 3711304-3711433 bp Feature: domain Description: HTH_33 Location: 3711556-3711721 bp Feature: domain Description: HTH_33 Location: 3711556-371172 1 bp Feature: domain Description: DDE_3 Location: 3711769-3712183 bp Feature: domain Description: DDE_3 Location: 3711769-3712 183 bp Feature: gene Location: 3713278-3714621 bp Ori: QJW95884.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3713551-3714235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3713551-37142 35 bp Feature: domain Description: GIIM Note: maturase Location: 3714304-3714502 bp Feature: domain Description: GIIM Note: maturase Location: 3714304-3714502 bp Feature: gene Location: 3715373-3715804 bp Feature: gene Location: 3715841-3715963 bp Feature: gene Location: 4731072-4733450 bp Ori: QJW96824.1 Feature: domain Description: TPR Location: 4731171-4731375 bp Feature: domain Description: TPR Location: 4731171-4731375 bp Feature: domain Description: Peptidase_S9 Location: 4732419-4732890 bp Feature: domain Description: Peptidase_S9 Location: 4732 419-4732 890 bp Feature: gene Location: 4733796-4734014 bp Feature: gene Location: 4734101-4734442 bp Ori: QJW96826.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4734107-4734308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4734107-4734308 bp Feature: gene Location: 4735003-4736514 bp Ori: QJW96827.1 Feature: domain Description: MJ0042_CXXC Location: 4735015-4735105 bp Feature: domain Description: MJ0042 _CXXC Location: 4735015-4735105 bp Feature: domain Description: tRNA_anti-like Location: 4735471-4735693 bp Feature: domain Description: tRNA_anti-like Location: 4735471-4735693 bp Feature: domain Description: tRNA_anti-like Location: 4735894-4736167 bp Feature: domain Description: tRNA_anti-like Location: 4735894-4736167 bp Feature: domain Description: tRNA_anti-like Location: 4736200-4736479 bp Feature: domain Description: tRNA_anti-like Location: 47362 00-4736479 bp Feature: gene Location: 4736664-4738430 bp Ori: QJW96828.1 Feature: domain Description: PLN02470 Location: 4736685-4738425 bp Feature: domain Description: PLN02 470 Location: 4736685-473842 5 bp Feature: gene Location: 6552438-6552626 bp Feature: gene Location: 6552881-6553666 bp Feature: gene Location: 6553663-6554586 bp Ori: QJW98455.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6553951-6554473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6553951-6554473 bp Feature: gene Location: 6554973-6555095 bp Feature: gene Location: 6555088-6556341 bp Ori: QJW98457.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6555292-6555949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65552 92 -6555949 bp Feature: domain Description: GIIM Note: maturase Location: 6556030-6556246 bp Feature: domain Description: GIIM Note: maturase Location: 6556030-65562 46 bp Feature: gene Location: 6556557-6556904 bp Feature: gene Location: 6556898-6557275 bp Ori: QJW98459.1 Feature: domain Description: TnpB_IS66 Location: 6556937-6557213 bp Feature: domain Description: TnpB_IS66 Location: 6556937-65572 13 bp Feature: gene Location: 7735489-7736256 bp Ori: QJW99530.1 Feature: domain Description: Pan_kinase Location: 7735507-7736089 bp Feature: domain Description: Pan_kinase Location: 7735507-7736089 bp Feature: gene Location: 7736253-7737575 bp Ori: QJW99531.1 Feature: domain Description: trmE Location: 7736259-7736532 bp Feature: domain Description: trmE Location: 77362 59-7736532 bp Feature: domain Description: trmE Location: 7736910-7737384 bp Feature: domain Description: trmE Location: 7736910-7737384 bp Feature: gene Location: 7737542-7738864 bp Ori: QJW99532.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7738001-7738622 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7738001-773862 2 bp Feature: gene Location: 7738993-7740858 bp Ori: QJW99533.1 Feature: domain Description: SWIM Location: 7740484-7740583 bp Feature: domain Description: SWIM Location: 7740484-7740583 bp Feature: gene Location: 7740863-7741210 bp Feature: gene Location: 8465806-8467500 bp Feature: gene Location: 8467539-8468036 bp Feature: gene Location: 8468342-8469928 bp Ori: QJX00153.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8469083-8469701 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8469083-8469701 bp Feature: gene Location: 8470102-8471049 bp Ori: QJX00154.1 Feature: domain Description: PQQ_2 Location: 8470207-8470972 bp Feature: domain Description: PQQ_2 Location: 84702 07-8470972 bp Feature: gene Location: 8471087-8471635 bp Feature: gene Location: 8745271-8745390 bp Feature: gene Location: 8745578-8746927 bp Ori: QJX00406.1 Feature: domain Description: DUF1501 Location: 8745704-8746925 bp Feature: domain Description: DUF1501 Location: 8745704-874692 5 bp Feature: gene Location: 8747022-8749571 bp Ori: QJX00407.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8748108-8748501 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8748108-8748501 bp Feature: gene Location: 8750005-8750175 bp Feature: gene Location: 8750589-8751026 bp Feature: gene Location: 8784055-8784864 bp Ori: QJX00433.1 Feature: domain Description: ParA Location: 8784097-8784811 bp Feature: domain Description: ParA Location: 8784097-8784811 bp Feature: gene Location: 8785003-8787036 bp Ori: QJX00434.1 Feature: domain Description: HEAT_2 Location: 8785117-8785381 bp Feature: domain Description: HEAT_2 Location: 8785117-8785381 bp Feature: domain Description: HEAT Location: 8785405-8785462 bp Feature: domain Description: HEAT Location: 8785405-8785462 bp Feature: domain Description: HEAT_2 Location: 8785633-8785822 bp Feature: domain Description: HEAT_2 Location: 8785633-878582 2 bp Feature: domain Description: Aldo_ket_red Location: 8786440-8786971 bp Feature: domain Description: Aldo_ket_red Location: 8786440-8786971 bp Feature: gene Location: 8787107-8788657 bp Ori: QJX00435.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8787743-8788367 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8787743-8788367 bp Feature: gene Location: 8788654-8789658 bp Ori: QJX00436.1 Feature: domain Description: pfam03781 Location: 8788927-8789626 bp Feature: domain Description: pfam03781 Location: 878892 7-878962 6 bp Feature: gene Location: 8789821-8790375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GATase1_PfpI_2 (cd03139), rpt_mate_G_obs (TIGR02996), LRR_RI (smart00368), AAA_25 (pfam13481), HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)
TPR (smart00028), Peptidase_S9 (pfam00326), MJ0042_CXXC (TIGR02098), tRNA_anti-like (pfam12869), PLN02470 (acetolactate synthase), TnpB_IS66 (pfam05717), Pan_kinase (pfam03309), trmE (PRK05291), RVT-Retrons, SWIM (pfam04434)
PQQ_2 (pfam13360), DUF1501 (pfam07394), ParA (pfam10609), HEAT_2 (pfam13646), HEAT (sd00044), Aldo_ket_red (pfam00248), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)