myRT

myRT report for GCA_013167355.1_ASM1316735v1

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Seq: CP038314.1 Escherichia coli O157:H7 strain OK1 plasmid pOK1-1, complete sequence (97630 bp)
Overview 1 RT 1: 55134-58705 bp Neighborhood of RT #1 [55134, 58705] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 55134-55439 bp Feature: gene Location: 55443-56345 bp Ori: QJZ91714.1 Feature: domain Description: DUF1281 Location: 55512-56040 bp Feature: domain Description: DUF1 281 Location: 5551 2-56040 bp Feature: domain Description: DUF1281_C Location: 56046-56274 bp Feature: domain Description: DUF1 281 _C Location: 56046-56274 bp Feature: gene Location: 56422-58146 bp Ori: QJZ91715.1 Gene: ltrA Feature: domain Description: RVT_N Location: 56479-56716 bp Feature: domain Description: RVT_N Location: 56479-5671 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56767-57415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56767-5741 5 bp Feature: domain Description: YkfC Location: 57547-57703 bp Feature: domain Description: YkfC Location: 57547-57703 bp Feature: domain Description: HNHc Note: nucleases Location: 57931-58090 bp Feature: domain Description: HNHc Note: nucleases Location: 57931 -58090 bp Feature: gene Location: 58168-58382 bp Feature: gene Location: 58409-58705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)