myRT

myRT report for GCA_013168095.1_ASM1316809v1

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Seq: CP038408.1 Escherichia coli O157:H7 strain 86-24 chromosome, complete genome (5467198 bp)
Overview 1 RT 1: 2456653-2459873 bp Neighborhood of RT #1 [2456653, 2459873] Minor_tail_Z Phage_tail_U RVT_N RVT-GII YkfC HNHc Feature: gene Location: 2456653-2457231 bp Ori: QKB59148.1 Feature: domain Description: Minor_tail_Z Location: 2456662-2457229 bp Feature: domain Description: Minor_tail_Z Location: 2456662-2457229 bp Feature: gene Location: 2457228-2457557 bp Ori: QKB59149.1 Feature: domain Description: Phage_tail_U Location: 2457231-2457519 bp Feature: domain Description: Phage_tail_U Location: 2457231 -245751 9 bp Feature: gene Location: 2457590-2459314 bp Ori: QKB59150.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2457647-2457884 bp Feature: domain Description: RVT_N Location: 2457647-2457884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2457935-2458583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2457935-2458583 bp Feature: domain Description: YkfC Location: 2458715-2458871 bp Feature: domain Description: YkfC Location: 245871 5-2458871 bp Feature: domain Description: HNHc Note: nucleases Location: 2459099-2459258 bp Feature: domain Description: HNHc Note: nucleases Location: 2459099-2459258 bp Feature: gene Location: 2459336-2459550 bp Feature: gene Location: 2459577-2459873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Minor_tail_Z (pfam06763), Phage_tail_U (pfam06141), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: CP038410.1 Escherichia coli O157:H7 strain 86-24 plasmid p86-24-1, complete sequence (92693 bp)
Overview 1 RT 1: 35716-39287 bp Neighborhood of RT #1 [35716, 39287] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 35716-36012 bp Feature: gene Location: 36039-36253 bp Feature: gene Location: 36275-37999 bp Ori: QKB62114.1 Gene: ltrA Feature: domain Description: RVT_N Location: 36332-36569 bp Feature: domain Description: RVT_N Location: 36332 -36569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36620-37268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3662 0-372 68 bp Feature: domain Description: YkfC Location: 37400-37556 bp Feature: domain Description: YkfC Location: 37400-37556 bp Feature: domain Description: HNHc Note: nucleases Location: 37784-37943 bp Feature: domain Description: HNHc Note: nucleases Location: 37784-37943 bp Feature: gene Location: 38076-38978 bp Ori: QKB62115.1 Feature: domain Description: DUF1281 Location: 38145-38673 bp Feature: domain Description: DUF12 81 Location: 38145-38673 bp Feature: domain Description: DUF1281_C Location: 38679-38907 bp Feature: domain Description: DUF12 81_C Location: 38679-38907 bp Feature: gene Location: 38982-39287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)