myRT

myRT report for GCA_013200995.1_ASM1320099v1

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Seq: CP053689.1 Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence (250451 bp)
Overview 1 RT 1: 24863-29482 bp 2 RT 2: 132672-137171 bp Neighborhood of RT #1 [24863, 29649] HTH_3 Dockerin_II RVT_N RVT-GII GIIM PHA02517 HTH_21 Neighborhood of RT #2 [132672, 137171] CPBP RVT-GII Feature: gene Location: 24863-26110 bp Ori: QKE76011.1 Feature: domain Description: HTH_3 Location: 24884-25037 bp Feature: domain Description: HTH_3 Location: 24884-25037 bp Feature: gene Location: 26383-26787 bp Ori: QKE76012.1 Feature: domain Description: Dockerin_II Location: 26548-26689 bp Feature: domain Description: Dockerin_II Location: 26548-26689 bp Feature: gene Location: 26974-28623 bp Ori: QKE76013.1 Gene: ltrA Feature: domain Description: RVT_N Location: 27022-27268 bp Feature: domain Description: RVT_N Location: 27022-27268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27322-27982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27322-27982 bp Feature: domain Description: GIIM Note: maturase Location: 28048-28282 bp Feature: domain Description: GIIM Note: maturase Location: 28048-28282 bp Feature: gene Location: 29240-29422 bp Ori: QKE76003.1 Feature: domain Description: PHA02517 Location: 29246-29384 bp Feature: domain Description: PHA0251 7 Location: 29246-29384 bp Feature: gene Location: 29335-29649 bp Ori: QKE76014.1 Feature: domain Description: HTH_21 Location: 29359-29482 bp Feature: domain Description: HTH_21 Location: 29359-29482 bp Feature: gene Location: 132672-133115 bp Feature: gene Location: 133321-134022 bp Ori: QKE76090.1 Feature: domain Description: CPBP Location: 133711-133993 bp Feature: domain Description: CPBP Location: 1 3371 1 -1 33993 bp Feature: gene Location: 134244-135572 bp Ori: QKE76091.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134499-135192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34499-1 351 92 bp Feature: gene Location: 136372-136539 bp Feature: gene Location: 136710-137171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), Dockerin_II (cd14254), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_21 (pfam13276), CPBP

Seq: CP053688.1 Arthrobacter citreus strain NEB 577 chromosome, complete genome (5207261 bp)
Overview 1 RT 1: 763562-769989 bp 2 RT 2: 796546-809516 bp 3 RT 3: 1940960-1945941 bp 4 RT 4: 3104612-3109387 bp 5 RT 5: 4684054-4688542 bp 6 RT 6: 5201901-5205747 bp Neighborhood of RT #1 [763562, 769989] PRK15086 KOG2413 RVT-GII GIIM SnoaL Neighborhood of RT #2 [796546, 809521] DUF3916 DUF4309 RVT-GII GIIM DUF4309 DUF4309 RVT-GII LGFP LGFP DUF4959 SH3_3 Excalibur Neighborhood of RT #3 [1940960, 1945941] PaaI_thioesterase RVT-GII GIIM tgl Neighborhood of RT #4 [3104612, 3109416] RVT-GII spore_yhbH Neighborhood of RT #5 [4684054, 4688997] PRK06704 clpP RVT-GII GIIM Cupin_2 NT_KNTase_like Neighborhood of RT #6 [5201901, 5205747] RVT-GII GIIM Feature: gene Location: 763562-764683 bp Ori: QKE72027.1 Gene: eutH Feature: domain Description: PRK15086 Location: 763565-764639 bp Feature: domain Description: PRK15086 Location: 763565-764639 bp Feature: gene Location: 764667-766445 bp Ori: QKE72028.1 Feature: domain Description: KOG2413 Location: 764682-766443 bp Feature: domain Description: KOG2 413 Location: 764682 -766443 bp Feature: gene Location: 767361-768794 bp Ori: QKE75744.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767589-768213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767589-7682 13 bp Feature: domain Description: GIIM Note: maturase Location: 768285-768483 bp Feature: domain Description: GIIM Note: maturase Location: 7682 85-768483 bp Feature: gene Location: 769151-769582 bp Ori: QKE72029.1 Feature: domain Description: SnoaL Location: 769169-769553 bp Feature: domain Description: SnoaL Location: 769169-769553 bp Feature: gene Location: 769822-769989 bp Feature: gene Location: 796546-797070 bp Ori: QKE72058.1 Feature: domain Description: DUF3916 Location: 796618-797059 bp Feature: domain Description: DUF3916 Location: 796618-797059 bp Feature: gene Location: 797260-797595 bp Ori: QKE72059.1 Feature: domain Description: DUF4309 Location: 797407-797515 bp Feature: domain Description: DUF4309 Location: 797407-797515 bp Feature: gene Location: 798221-799654 bp Ori: QKE75747.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798449-799073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798449-799073 bp Feature: domain Description: GIIM Note: maturase Location: 799145-799343 bp Feature: domain Description: GIIM Note: maturase Location: 799145-799343 bp Feature: gene Location: 799766-800446 bp Ori: QKE72060.1 Feature: domain Description: DUF4309 Location: 799787-799985 bp Feature: domain Description: DUF4309 Location: 799787-799985 bp Feature: domain Description: DUF4309 Location: 800054-800390 bp Feature: domain Description: DUF4309 Location: 800054-800390 bp Feature: gene Location: 800670-801314 bp Feature: gene Location: 802790-803437 bp Feature: gene Location: 803622-804359 bp Feature: gene Location: 805298-806626 bp Ori: QKE72064.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 805553-806246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 805553-8062 46 bp Feature: gene Location: 806857-807867 bp Ori: QKE72065.1 Feature: domain Description: LGFP Location: 807052-807163 bp Feature: domain Description: LGFP Location: 807052 -807163 bp Feature: domain Description: LGFP Location: 807172-807268 bp Feature: domain Description: LGFP Location: 807172 -8072 68 bp Feature: gene Location: 808769-809521 bp Ori: QKE75749.1 Feature: domain Description: DUF4959 Location: 808934-809198 bp Feature: domain Description: DUF4959 Location: 808934-809198 bp Feature: domain Description: SH3_3 Location: 809240-809396 bp Feature: domain Description: SH3_3 Location: 8092 40-809396 bp Feature: domain Description: Excalibur Location: 809411-809516 bp Feature: domain Description: Excalibur Location: 809411-809516 bp Feature: gene Location: 1940960-1941322 bp Feature: gene Location: 1941592-1942071 bp Ori: QKE73088.1 Feature: domain Description: PaaI_thioesterase Location: 1941706-1942042 bp Feature: domain Description: PaaI_thioesterase Location: 1941706-1942 042 bp Feature: gene Location: 1942383-1943816 bp Ori: QKE75807.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942611-1943235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942 611-19432 35 bp Feature: domain Description: GIIM Note: maturase Location: 1943307-1943505 bp Feature: domain Description: GIIM Note: maturase Location: 1943307-1943505 bp Feature: gene Location: 1944505-1945341 bp Ori: QKE73089.1 Feature: domain Description: tgl Location: 1944559-1945276 bp Feature: domain Description: tgl Location: 1944559-19452 76 bp Feature: gene Location: 1945756-1945941 bp Feature: gene Location: 3104612-3104857 bp Feature: gene Location: 3105037-3105564 bp Feature: gene Location: 3105822-3107150 bp Ori: QKE73996.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3106077-3106770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3106077-3106770 bp Feature: gene Location: 3107712-3107972 bp Feature: gene Location: 3108223-3109416 bp Ori: QKE73998.1 Gene: yhbH Feature: domain Description: spore_yhbH Location: 3108265-3109387 bp Feature: domain Description: spore_yhbH Location: 31082 65-3109387 bp Feature: gene Location: 4684054-4684773 bp Ori: QKE75258.1 Feature: domain Description: PRK06704 Location: 4684105-4684765 bp Feature: domain Description: PRK06704 Location: 4684105-4684765 bp Feature: gene Location: 4684804-4685388 bp Ori: QKE75259.1 Gene: clpP Feature: domain Description: clpP Location: 4684807-4685374 bp Feature: domain Description: clpP Location: 4684807-4685374 bp Feature: gene Location: 4686083-4687516 bp Ori: QKE75972.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4686311-4686935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4686311-4686935 bp Feature: domain Description: GIIM Note: maturase Location: 4687007-4687205 bp Feature: domain Description: GIIM Note: maturase Location: 4687007-46872 05 bp Feature: gene Location: 4687739-4688230 bp Ori: QKE75260.1 Feature: domain Description: Cupin_2 Location: 4687898-4688063 bp Feature: domain Description: Cupin_2 Location: 4687898-4688063 bp Feature: gene Location: 4688278-4688997 bp Ori: QKE75261.1 Feature: domain Description: NT_KNTase_like Location: 4688326-4688542 bp Feature: domain Description: NT_KNTase_like Location: 468832 6-4688542 bp Feature: gene Location: 5201901-5202059 bp Feature: gene Location: 5202233-5202550 bp Feature: gene Location: 5203285-5204718 bp Ori: QKE76001.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5203513-5204137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 03513-52 04137 bp Feature: domain Description: GIIM Note: maturase Location: 5204209-5204407 bp Feature: domain Description: GIIM Note: maturase Location: 52 042 09-52 04407 bp Feature: gene Location: 5204941-5205297 bp Feature: gene Location: 5205409-5205747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15086 (ethanolamine utilization protein EutH; Provisional), KOG2413 (KOG2413, Xaa-Pro aminopeptidase ), RVT-GII, GIIM (pfam08388), SnoaL (pfam07366), DUF3916 (pfam13079), DUF4309 (pfam14172), LGFP (pfam08310), DUF4959 (pfam16323), SH3_3 (pfam08239)
Excalibur (smart00894), PaaI_thioesterase (cd03443), tgl (PRK03187), spore_yhbH (TIGR02877), PRK06704 (RNA polymerase subunit sigma-70), clpP, Cupin_2 (pfam07883), NT_KNTase_like (cd05403)