myRT

myRT report for GCA_013201235.1_ASM1320123v1

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Seq: CP053736.1 Escherichia coli strain CP8-3_Sichuan chromosome, complete genome (4726108 bp)
Overview 1 RT 1: 2370345-2379130 bp 2 RT 2: 3396113-3400236 bp 3 RT 3: 3614789-3621775 bp Neighborhood of RT #1 [2370345, 2379129] LysM PHA02517 RVT-GII GIIM InsE BID_1 BID_1 BID_1 BID_1 BID_1 BID_1 BID_1 Neighborhood of RT #2 [3396113, 3400244] PRK03759 PHA02517 RVT-GII GIIM InsE PRK03759 Neighborhood of RT #3 [3614789, 3621786] HsdM PHA02517 RVT-GII GIIM InsE IS285 Feature: gene Location: 2370345-2373564 bp Gene: yeeJ Feature: domain Description: LysM Location: 2370558-2370696 bp Feature: domain Description: LysM Location: 2370558-2370696 bp Feature: gene Location: 2373608-2374087 bp Feature: domain Description: PHA02517 Location: 2373611-2374085 bp Feature: domain Description: PHA0251 7 Location: 237361 1 -2374085 bp Feature: gene Location: 2374171-2375679 bp Ori: QKF25548.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2374429-2375161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2374429-23751 61 bp Feature: domain Description: GIIM Note: maturase Location: 2375236-2375434 bp Feature: domain Description: GIIM Note: maturase Location: 2375236-2375434 bp Feature: gene Location: 2376352-2377091 bp Feature: domain Description: InsE Location: 2376355-2376694 bp Feature: domain Description: InsE Location: 2376355-2376694 bp Feature: gene Location: 2377147-2379129 bp Feature: domain Description: BID_1 Location: 2377150-2377312 bp Feature: domain Description: BID_1 Location: 23771 50-237731 2 bp Feature: domain Description: BID_1 Location: 2377348-2377612 bp Feature: domain Description: BID_1 Location: 2377348-237761 2 bp Feature: domain Description: BID_1 Location: 2377648-2377945 bp Feature: domain Description: BID_1 Location: 2377648-2377945 bp Feature: domain Description: BID_1 Location: 2378008-2378248 bp Feature: domain Description: BID_1 Location: 2378008-2378248 bp Feature: domain Description: BID_1 Location: 2378281-2378551 bp Feature: domain Description: BID_1 Location: 2378281 -2378551 bp Feature: domain Description: BID_1 Location: 2378590-2378866 bp Feature: domain Description: BID_1 Location: 2378590-2378866 bp Feature: domain Description: BID_1 Location: 2378866-2379130 bp Feature: domain Description: BID_1 Location: 2378866-23791 30 bp Feature: gene Location: 3396113-3396196 bp Feature: domain Description: PRK03759 Location: 3396116-3396197 bp Feature: domain Description: PRK03759 Location: 33961 1 6-33961 97 bp Feature: gene Location: 3396239-3396718 bp Feature: domain Description: PHA02517 Location: 3396242-3396716 bp Feature: domain Description: PHA0251 7 Location: 3396242-339671 6 bp Feature: gene Location: 3396802-3398310 bp Ori: QKF25587.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3397060-3397792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3397060-3397792 bp Feature: domain Description: GIIM Note: maturase Location: 3397867-3398065 bp Feature: domain Description: GIIM Note: maturase Location: 3397867-3398065 bp Feature: gene Location: 3398983-3399722 bp Feature: domain Description: InsE Location: 3398986-3399325 bp Feature: domain Description: InsE Location: 3398986-3399325 bp Feature: gene Location: 3399774-3400244 bp Gene: idi Feature: domain Description: PRK03759 Location: 3399780-3400236 bp Feature: domain Description: PRK03759 Location: 3399780-3400236 bp Feature: gene Location: 3614789-3617212 bp Ori: QKF24469.1 Feature: domain Description: HsdM Location: 3614810-3616754 bp Feature: domain Description: HsdM Location: 361 481 0-361 6754 bp Feature: gene Location: 3617471-3617938 bp Feature: domain Description: PHA02517 Location: 3617474-3617933 bp Feature: domain Description: PHA0251 7 Location: 361 7474-361 7933 bp Feature: gene Location: 3618019-3619527 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3618277-3619009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 8277-361 9009 bp Feature: domain Description: GIIM Note: maturase Location: 3619084-3619282 bp Feature: domain Description: GIIM Note: maturase Location: 361 9084-361 9282 bp Feature: gene Location: 3620200-3620939 bp Feature: domain Description: InsE Location: 3620203-3620539 bp Feature: domain Description: InsE Location: 3620203-3620539 bp Feature: gene Location: 3620995-3621786 bp Feature: domain Description: IS285 Location: 3620998-3621775 bp Feature: domain Description: IS285 Location: 3620998-3621 775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), BID_1 (smart00634), PRK03759 (isopentenyl-diphosphate Delta-isomerase), HsdM (COG0286), IS285 (COG3328)

Seq: CP053739.1 Escherichia coli strain CP8-3_Sichuan plasmid pCP8-3-IncR, complete sequence (47220 bp)
Overview 1 RT 1: 28023-33127 bp Neighborhood of RT #1 [28023, 33180] PIN_VapC4-5_FitB-like InsE RVT-GII GIIM MFS_ExuT_GudP_like Feature: gene Location: 28023-28439 bp Ori: QKF25810.1 Feature: domain Description: PIN_VapC4-5_FitB-like Location: 28041-28431 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 2 8041-2 8431 bp Feature: gene Location: 28643-29328 bp Feature: domain Description: InsE Location: 28655-28919 bp Feature: domain Description: InsE Location: 2 8655-2 8919 bp Feature: gene Location: 29997-31505 bp Ori: QKF25822.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30255-30987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302 55-30987 bp Feature: domain Description: GIIM Note: maturase Location: 31062-31260 bp Feature: domain Description: GIIM Note: maturase Location: 31062 -312 60 bp Feature: gene Location: 31600-31716 bp Feature: gene Location: 31900-33180 bp Ori: QKF25811.1 Feature: domain Description: MFS_ExuT_GudP_like Location: 31924-33127 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 3192 4-3312 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC4-5_FitB-like (cd18754), InsE (COG2963), RVT-GII, GIIM (pfam08388), MFS_ExuT_GudP_like (cd17319)