myRT

myRT report for GCA_013201485.1_ASM1320148v1

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Seq: CP053752.1 Shigella sonnei strain 506 plasmid pMHMC-001, complete sequence (212834 bp)
Overview 1 RT 1: 38817-42704 bp 2 RT 2: 66576-69852 bp 3 RT 3: 79221-82023 bp 4 RT 4: 170941-174610 bp Neighborhood of RT #1 [38817, 42787] DUF1472 DDE_Tnp_1 RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Neighborhood of RT #2 [66576, 69854] Tra5 RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Neighborhood of RT #3 [79221, 82272] InsE RVT-GII Y2_Tnp Neighborhood of RT #4 [170941, 174642] COG4584 group_II_RT_mat RVT-GII DDE_Tnp_IS66_C COG3547 Feature: gene Location: 38817-39251 bp Feature: domain Description: DUF1472 Location: 38907-39207 bp Feature: domain Description: DUF1 472 Location: 38907-39207 bp Feature: gene Location: 39422-40204 bp Feature: domain Description: DDE_Tnp_1 Location: 39428-40136 bp Feature: domain Description: DDE_Tnp_1 Location: 39428-401 36 bp Feature: gene Location: 40203-40850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40338-40824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40338-40824 bp Feature: gene Location: 40944-41588 bp Ori: QKF39814.1 Feature: domain Description: HTH_23 Location: 41028-41115 bp Feature: domain Description: HTH_23 Location: 41 028-41 1 1 5 bp Feature: domain Description: InsE Location: 41244-41439 bp Feature: domain Description: InsE Location: 41 244-41 439 bp Feature: gene Location: 41756-42787 bp Ori: QKF39701.1 Feature: domain Description: HTH_23 Location: 41834-41975 bp Feature: domain Description: HTH_23 Location: 41 834-41 975 bp Feature: domain Description: HTH_33 Location: 42080-42227 bp Feature: domain Description: HTH_33 Location: 42080-42227 bp Feature: domain Description: DDE_3 Location: 42284-42704 bp Feature: domain Description: DDE_3 Location: 42284-42704 bp Feature: gene Location: 66576-67489 bp Feature: gene Location: 67549-67695 bp Feature: domain Description: Tra5 Location: 67552-67678 bp Feature: domain Description: Tra5 Location: 67552-67678 bp Feature: gene Location: 67741-69050 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68008-68665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68008-68665 bp Feature: gene Location: 69227-69661 bp Ori: QKF39816.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 69260-69557 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 69260-69557 bp Feature: gene Location: 69735-69854 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 69777-69852 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 69777-69852 bp Feature: gene Location: 79221-79908 bp Feature: domain Description: InsE Location: 79224-79467 bp Feature: domain Description: InsE Location: 79224-79467 bp Feature: gene Location: 79910-80276 bp Feature: gene Location: 80279-80677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80447-80678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80447-80678 bp Feature: gene Location: 81430-81795 bp Feature: gene Location: 81843-82272 bp Feature: domain Description: Y2_Tnp Location: 81852-82023 bp Feature: domain Description: Y2_Tnp Location: 81 852-82023 bp Feature: gene Location: 170941-172113 bp Ori: QKF39787.1 Feature: domain Description: COG4584 Location: 170944-171781 bp Feature: domain Description: COG4584 Location: 1 70944-1 71 781 bp Feature: gene Location: 172637-172761 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 172670-172757 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 72670-1 72757 bp Feature: gene Location: 172742-173868 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172838-173300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 72838-1 73300 bp Feature: gene Location: 173951-174130 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 173996-174107 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 73996-1 741 07 bp Feature: gene Location: 174160-174642 bp Feature: domain Description: COG3547 Location: 174178-174610 bp Feature: domain Description: COG3547 Location: 1 741 78-1 7461 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1472 (pfam07339), DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592), DDE_3 (pfam13358), Tra5 (COG2801), group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817)
Y2_Tnp (pfam04986), COG4584 (Transposase ), COG3547 (Transposase )