myRT

myRT report for GCA_013255565.1_ASM1325556v1

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Seq: CP053917.1 Pseudomonas aeruginosa strain PSE6684 chromosome, complete genome (6924367 bp)
Overview 1 RT 1: 2185115-2193985 bp 2 RT 2: 2210250-2220549 bp Neighborhood of RT #1 [2185115, 2193993] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [2210250, 2220560] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 2185115-2185789 bp Ori: QKG35157.1 Feature: domain Description: NTP_transferase_like_1 Location: 2185121-2185760 bp Feature: domain Description: NTP_transferase_like_1 Location: 21 851 21 -21 85760 bp Feature: gene Location: 2185786-2186802 bp Ori: QKG35158.1 Feature: domain Description: COG3178 Location: 2185789-2186788 bp Feature: domain Description: COG31 78 Location: 21 85789-21 86788 bp Feature: gene Location: 2188074-2189786 bp Ori: QKG35159.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2188131-2188374 bp Feature: domain Description: RVT_N Location: 21 881 31 -21 88374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2188419-2189055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 8841 9-21 89055 bp Feature: domain Description: YkfC Location: 2189265-2189415 bp Feature: domain Description: YkfC Location: 21 89265-21 8941 5 bp Feature: domain Description: HNH Note: nucleases Location: 2189592-2189730 bp Feature: domain Description: HNH Note: nucleases Location: 21 89592-21 89730 bp Feature: gene Location: 2189919-2192720 bp Ori: QKG35160.1 Feature: domain Description: LptD Location: 2190114-2192706 bp Feature: domain Description: LptD Location: 21 901 1 4-21 92706 bp Feature: gene Location: 2192701-2193993 bp Ori: QKG35161.1 Feature: domain Description: PRK10770 Location: 2192791-2193985 bp Feature: domain Description: PRK1 0770 Location: 21 92791 -21 93985 bp Feature: gene Location: 2210250-2212103 bp Ori: QKG35179.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 2210262-2212101 bp Feature: domain Description: PRK05658 Location: 221 0262-221 21 01 bp Feature: gene Location: 2212210-2215947 bp Ori: QKG35180.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 2212318-2212975 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 221 231 8-221 2975 bp Feature: domain Description: PRK09776 Location: 2213188-2213659 bp Feature: domain Description: PRK09776 Location: 221 31 88-221 3659 bp Feature: domain Description: PAS Location: 2213716-2214241 bp Feature: domain Description: PAS Location: 221 371 6-221 4241 bp Feature: domain Description: PRK10060 Location: 2214250-2215897 bp Feature: domain Description: PRK1 0060 Location: 221 4250-221 5897 bp Feature: gene Location: 2217028-2218713 bp Ori: QKG35181.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2217085-2217325 bp Feature: domain Description: RVT_N Location: 221 7085-221 7325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2217373-2218009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 7373-221 8009 bp Feature: domain Description: GIIM Note: maturase Location: 2218063-2218294 bp Feature: domain Description: GIIM Note: maturase Location: 221 8063-221 8294 bp Feature: domain Description: HNH Note: nucleases Location: 2218546-2218684 bp Feature: domain Description: HNH Note: nucleases Location: 221 8546-221 8684 bp Feature: gene Location: 2219016-2219177 bp Feature: gene Location: 2219439-2220560 bp Ori: QKG35183.1 Feature: domain Description: COG3177 Location: 2219457-2220549 bp Feature: domain Description: COG31 77 Location: 221 9457-2220549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )