myRT

myRT report for GCA_013267455.1_ASM1326745v1

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Seq: CP053991.1 Bacillus cereus strain FDAARGOS_781 chromosome, complete genome (5271029 bp)
Overview 1 RT 1: 1504814-1509776 bp 2 RT 2: 1570256-1581305 bp 3 RT 3: 2711064-2721927 bp 4 RT 4: 3322078-3327243 bp Neighborhood of RT #1 [1504814, 1509826] RVT_N RVT-GII GIIM spore_ytfJ Neighborhood of RT #2 [1570256, 1581307] DUF4318 PRK06752 RVT_N RVT-GII GIIM Nfu_N Virulence_fact HEAT DUF393 YphP_YqiW SAM_MT RVT-GII Intron_maturas2 HNHc PRK12451 Neighborhood of RT #3 [2711064, 2721941] Hydrolase_4 HTH_3 TPR_12 RVT_N RVT-GII GIIM Hit MTH1 RVT_N RVT-GII GIIM YbaK_EbsC PRK12420 Neighborhood of RT #4 [3322078, 3327299] YugN amiF RVT-GII HNHc amiF caa3_CtaG Feature: gene Location: 1504814-1505005 bp Feature: gene Location: 1505246-1505588 bp Feature: gene Location: 1505830-1507476 bp Ori: QKH65604.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1505872-1506109 bp Feature: domain Description: RVT_N Location: 1 505872-1 5061 09 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506163-1506823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5061 63-1 506823 bp Feature: domain Description: GIIM Note: maturase Location: 1506892-1507123 bp Feature: domain Description: GIIM Note: maturase Location: 1 506892-1 5071 23 bp Feature: gene Location: 1508110-1508433 bp Feature: gene Location: 1509401-1509826 bp Ori: QKH65606.1 Gene: ytfJ Feature: domain Description: spore_ytfJ Location: 1509407-1509776 bp Feature: domain Description: spore_ytfJ Location: 1 509407-1 509776 bp Feature: gene Location: 1570256-1570510 bp Ori: QKH65663.1 Feature: domain Description: DUF4318 Location: 1570301-1570508 bp Feature: domain Description: DUF431 8 Location: 1 570301 -1 570508 bp Feature: gene Location: 1570669-1571004 bp Ori: QKH65664.1 Feature: domain Description: PRK06752 Location: 1570672-1571002 bp Feature: domain Description: PRK06752 Location: 1 570672-1 571 002 bp Feature: gene Location: 1571891-1573537 bp Ori: QKH65665.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1571933-1572170 bp Feature: domain Description: RVT_N Location: 1 571 933-1 5721 70 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1572224-1572884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 572224-1 572884 bp Feature: domain Description: GIIM Note: maturase Location: 1572953-1573184 bp Feature: domain Description: GIIM Note: maturase Location: 1 572953-1 5731 84 bp Feature: gene Location: 1573912-1575039 bp Ori: QKH65666.1 Feature: domain Description: Nfu_N Location: 1573930-1574176 bp Feature: domain Description: Nfu_N Location: 1 573930-1 5741 76 bp Feature: domain Description: Virulence_fact Location: 1574233-1574467 bp Feature: domain Description: Virulence_fact Location: 1 574233-1 574467 bp Feature: domain Description: HEAT Location: 1574578-1575028 bp Feature: domain Description: HEAT Location: 1 574578-1 575028 bp Feature: gene Location: 1575043-1575426 bp Ori: QKH65667.1 Feature: domain Description: DUF393 Location: 1575052-1575370 bp Feature: domain Description: DUF393 Location: 1 575052-1 575370 bp Feature: gene Location: 1575510-1575944 bp Ori: QKH65668.1 Feature: domain Description: YphP_YqiW Location: 1575534-1575942 bp Feature: domain Description: YphP_YqiW Location: 1 575534-1 575942 bp Feature: gene Location: 1575994-1576548 bp Feature: domain Description: SAM_MT Location: 1576117-1576549 bp Feature: domain Description: SAM_MT Location: 1 5761 1 7-1 576549 bp Feature: gene Location: 1577176-1578993 bp Ori: QKH65669.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1577440-1578271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 577440-1 578271 bp Feature: domain Description: Intron_maturas2 Location: 1578352-1578643 bp Feature: domain Description: Intron_maturas2 Location: 1 578352-1 578643 bp Feature: domain Description: HNHc Note: nucleases Location: 1578790-1578967 bp Feature: domain Description: HNHc Note: nucleases Location: 1 578790-1 578967 bp Feature: gene Location: 1579097-1579318 bp Feature: gene Location: 1579619-1581307 bp Ori: QKH65670.1 Gene: argS Feature: domain Description: PRK12451 Location: 1579622-1581305 bp Feature: domain Description: PRK1 2451 Location: 1 579622-1 581 305 bp Feature: gene Location: 2711064-2712026 bp Ori: QKH66752.1 Feature: domain Description: Hydrolase_4 Location: 2711229-2711889 bp Feature: domain Description: Hydrolase_4 Location: 271 1 229-271 1 889 bp Feature: gene Location: 2712036-2713160 bp Ori: QKH66753.1 Feature: domain Description: HTH_3 Location: 2712066-2712228 bp Feature: domain Description: HTH_3 Location: 271 2066-271 2228 bp Feature: domain Description: TPR_12 Location: 2712831-2712924 bp Feature: domain Description: TPR_1 2 Location: 271 2831 -271 2924 bp Feature: gene Location: 2713519-2715165 bp Ori: QKH66754.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2713561-2713798 bp Feature: domain Description: RVT_N Location: 271 3561 -271 3798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2713852-2714512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 3852-271 451 2 bp Feature: domain Description: GIIM Note: maturase Location: 2714581-2714812 bp Feature: domain Description: GIIM Note: maturase Location: 271 4581 -271 481 2 bp Feature: gene Location: 2715909-2716382 bp Ori: QKH66755.1 Feature: domain Description: Hit Location: 2715945-2716335 bp Feature: domain Description: Hit Location: 271 5945-271 6335 bp Feature: gene Location: 2716407-2716895 bp Ori: QKH66756.1 Feature: domain Description: MTH1 Location: 2716416-2716827 bp Feature: domain Description: MTH1 Location: 271 641 6-271 6827 bp Feature: gene Location: 2717116-2718762 bp Ori: QKH66757.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2717158-2717395 bp Feature: domain Description: RVT_N Location: 271 71 58-271 7395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2717449-2718109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 7449-271 81 09 bp Feature: domain Description: GIIM Note: maturase Location: 2718178-2718409 bp Feature: domain Description: GIIM Note: maturase Location: 271 81 78-271 8409 bp Feature: gene Location: 2719847-2720323 bp Ori: QKH66758.1 Gene: ybaK Feature: domain Description: YbaK_EbsC Location: 2719865-2720315 bp Feature: domain Description: YbaK_EbsC Location: 271 9865-272031 5 bp Feature: gene Location: 2720664-2721941 bp Ori: QKH66759.1 Gene: hisS Feature: domain Description: PRK12420 Location: 2720667-2721927 bp Feature: domain Description: PRK1 2420 Location: 2720667-2721 927 bp Feature: gene Location: 3322078-3322443 bp Ori: QKH67315.1 Feature: domain Description: YugN Location: 3322099-3322345 bp Feature: domain Description: YugN Location: 3322099-3322345 bp Feature: gene Location: 3322490-3323113 bp Feature: domain Description: amiF Location: 3322493-3323108 bp Feature: domain Description: amiF Location: 3322493-33231 08 bp Feature: gene Location: 3323230-3325062 bp Ori: QKH67316.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3323530-3324235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3323530-3324235 bp Feature: domain Description: HNHc Note: nucleases Location: 3324814-3324946 bp Feature: domain Description: HNHc Note: nucleases Location: 332481 4-3324946 bp Feature: gene Location: 3325796-3326167 bp Gene: amiF Feature: domain Description: amiF Location: 3325799-3326168 bp Feature: domain Description: amiF Location: 3325799-33261 68 bp Feature: gene Location: 3326394-3327299 bp Ori: QKH67317.1 Gene: ctaG Feature: domain Description: caa3_CtaG Location: 3326403-3327243 bp Feature: domain Description: caa3_CtaG Location: 3326403-3327243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), spore_ytfJ (TIGR02874), DUF4318 (pfam14201), PRK06752 (single-stranded DNA-binding protein; Validated), Nfu_N (smart00932), Virulence_fact (pfam13769), HEAT (sd00044), DUF393 (pfam04134)
YphP_YqiW (TIGR04191), SAM_MT (pfam04445), Intron_maturas2 (pfam01348), HNHc (smart00507), PRK12451 (arginyl-tRNA synthetase; Reviewed), Hydrolase_4 (pfam12146), HTH_3 (pfam01381), TPR_12 (pfam13424), Hit (COG0537), MTH1
YbaK_EbsC (TIGR00011), PRK12420 (histidyl-tRNA synthetase; Provisional), YugN (pfam08868), amiF (PRK13287), caa3_CtaG (TIGR02737)

Seq: CP053992.1 Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence (312478 bp)
Overview 1 RT 1: 107771-115158 bp 2 RT 2: 137678-143495 bp 3 RT 3: 157078-163719 bp 4 RT 4: 171115-179702 bp 5 RT 5: 195115-201282 bp Neighborhood of RT #1 [107771, 115172] RVT_N RVT-GII GIIM nuc_hydro DEXXQc_Upf1-like KOG1803 Neighborhood of RT #2 [137678, 143602] RVT-GII HNHc E1_enzyme_family PRTRC_A Neighborhood of RT #3 [157078, 163754] DUF3854 RVT-GII GIIM HNHc HTH_XRE Neighborhood of RT #4 [171115, 179800] Replic_Relax RVT-GII Intron_maturas2 HNHc TraG-D_C xerC Neighborhood of RT #5 [195115, 201282] TcpE AAA_10 RVT-GII HNHc AAA_10 Feature: gene Location: 107771-107998 bp Feature: gene Location: 108164-108406 bp Feature: gene Location: 108607-110253 bp Ori: QKH69423.1 Gene: ltrA Feature: domain Description: RVT_N Location: 108649-108886 bp Feature: domain Description: RVT_N Location: 108649-108886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108940-109600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108940-109600 bp Feature: domain Description: GIIM Note: maturase Location: 109669-109900 bp Feature: domain Description: GIIM Note: maturase Location: 109669-109900 bp Feature: gene Location: 110973-111923 bp Ori: QKH69424.1 Feature: domain Description: nuc_hydro Location: 110988-111894 bp Feature: domain Description: nuc_hydro Location: 110988-111894 bp Feature: gene Location: 112356-115172 bp Ori: QKH69425.1 Feature: domain Description: DEXXQc_Upf1-like Location: 113415-114624 bp Feature: domain Description: DEXXQc_Upf1-like Location: 113415-11462 4 bp Feature: domain Description: KOG1803 Location: 114840-115158 bp Feature: domain Description: KOG1803 Location: 114840-115158 bp Feature: gene Location: 137678-138655 bp Feature: gene Location: 139038-139565 bp Feature: gene Location: 139629-141509 bp Ori: QKH69452.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139959-140688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139959-140688 bp Feature: domain Description: HNHc Note: nucleases Location: 141246-141396 bp Feature: domain Description: HNHc Note: nucleases Location: 1412 46-141396 bp Feature: gene Location: 142209-142610 bp Ori: QKH69453.1 Feature: domain Description: E1_enzyme_family Location: 142257-142593 bp Feature: domain Description: E1_enzyme_family Location: 142 2 57-142 593 bp Feature: gene Location: 142607-143602 bp Ori: QKH69454.1 Feature: domain Description: PRTRC_A Location: 143141-143495 bp Feature: domain Description: PRTRC_A Location: 143141-143495 bp Feature: gene Location: 157078-157308 bp Feature: gene Location: 157801-159042 bp Ori: QKH69603.1 Feature: domain Description: DUF3854 Location: 158689-159010 bp Feature: domain Description: DUF3854 Location: 158689-159010 bp Feature: gene Location: 159077-160900 bp Ori: QKH69602.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159371-160070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159371-160070 bp Feature: domain Description: GIIM Note: maturase Location: 160154-160397 bp Feature: domain Description: GIIM Note: maturase Location: 160154-160397 bp Feature: domain Description: HNHc Note: nucleases Location: 160643-160781 bp Feature: domain Description: HNHc Note: nucleases Location: 160643-160781 bp Feature: gene Location: 161960-163510 bp Feature: gene Location: 163512-163754 bp Ori: QKH69470.1 Feature: domain Description: HTH_XRE Location: 163581-163719 bp Feature: domain Description: HTH_XRE Location: 163581-163719 bp Feature: gene Location: 171115-172665 bp Ori: QKH69477.1 Feature: domain Description: Replic_Relax Location: 171211-171934 bp Feature: domain Description: Replic_Relax Location: 1712 11-171934 bp Feature: gene Location: 172637-174316 bp Feature: gene Location: 174941-176758 bp Ori: QKH69478.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175205-176036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1752 05-176036 bp Feature: domain Description: Intron_maturas2 Location: 176117-176408 bp Feature: domain Description: Intron_maturas2 Location: 176117-176408 bp Feature: domain Description: HNHc Note: nucleases Location: 176555-176732 bp Feature: domain Description: HNHc Note: nucleases Location: 176555-176732 bp Feature: gene Location: 176859-178259 bp Feature: domain Description: TraG-D_C Location: 177006-177369 bp Feature: domain Description: TraG-D_C Location: 177006-177369 bp Feature: gene Location: 178826-179800 bp Ori: QKH69479.1 Feature: domain Description: xerC Location: 178853-179702 bp Feature: domain Description: xerC Location: 178853-179702 bp Feature: gene Location: 195115-195519 bp Ori: QKH69489.1 Feature: domain Description: TcpE Location: 195151-195424 bp Feature: domain Description: TcpE Location: 195151-19542 4 bp Feature: gene Location: 195579-197093 bp Feature: domain Description: AAA_10 Location: 196920-197094 bp Feature: domain Description: AAA_10 Location: 19692 0-197094 bp Feature: gene Location: 197830-199662 bp Ori: QKH69490.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198130-198835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198130-198835 bp Feature: domain Description: HNHc Note: nucleases Location: 199414-199546 bp Feature: domain Description: HNHc Note: nucleases Location: 199414-199546 bp Feature: gene Location: 199779-200798 bp Feature: domain Description: AAA_10 Location: 199785-200682 bp Feature: domain Description: AAA_10 Location: 199785-2 00682 bp Feature: gene Location: 200800-201282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), nuc_hydro (cl00226), DEXXQc_Upf1-like (cd17934), KOG1803 (KOG1803, DNA helicase ), HNHc (smart00507), E1_enzyme_family (cl22428), PRTRC_A (TIGR03735), DUF3854 (pfam12965)
HTH_XRE (smart00530), Replic_Relax (pfam13814), Intron_maturas2 (pfam01348), TraG-D_C (pfam12696), xerC (PRK01287), TcpE (pfam12648), AAA_10 (pfam12846)