myRT

myRT report for GCA_013267535.1_ASM1326753v1

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Seq: CP054000.1 Finegoldia magna strain FDAARGOS_764 chromosome, complete genome (2090058 bp)
Overview 1 RT 1: 349837-353097 bp 2 RT 2: 365758-377218 bp 3 RT 3: 414549-428246 bp 4 RT 4: 1509418-1512626 bp 5 RT 5: 1716038-1723331 bp 6 RT 6: 1928551-1932663 bp Neighborhood of RT #1 [349837, 353108] SSB_OBF Maff2 RVT-GII HNHc Maff2 Neighborhood of RT #2 [365758, 377394] Cyt_C5_DNA_methylase PHA03411 COG4646 HELICc RVT_N RVT-GII GIIM tRNA_anti-codon Neighborhood of RT #3 [414549, 428473] SR_TndX_transposase Recombinase SR_TndX_transposase Recombinase RVT-GII GIIM Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new CW_binding_2 CW_binding_2 CW_binding_2 Elp3 Neighborhood of RT #4 [1509418, 1512694] Maff2 RVT-GII HNHc Maff2 SSB_OBF Neighborhood of RT #5 [1716038, 1723363] PRK06827 PRK06358 RVT-GII GIIM YjgC YjgC Ferritin_like_AB Neighborhood of RT #6 [1928551, 1932728] Maff2 RVT-GII HNHc Maff2 SSB_OBF Feature: gene Location: 349837-350148 bp Ori: QKH79147.1 Feature: domain Description: SSB_OBF Location: 349861-350080 bp Feature: domain Description: SSB_OBF Location: 349861 -350080 bp Feature: gene Location: 350150-350281 bp Ori: QKH79148.1 Feature: domain Description: Maff2 Location: 350153-350279 bp Feature: domain Description: Maff2 Location: 3501 53-350279 bp Feature: gene Location: 350999-352858 bp Ori: QKH79149.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351317-352055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 31 7-352055 bp Feature: domain Description: HNHc Note: nucleases Location: 352586-352748 bp Feature: domain Description: HNHc Note: nucleases Location: 352586-352748 bp Feature: gene Location: 352920-353009 bp Feature: gene Location: 353010-353108 bp Feature: domain Description: Maff2 Location: 353013-353097 bp Feature: domain Description: Maff2 Location: 35301 3-353097 bp Feature: gene Location: 365758-366723 bp Ori: QKH79161.1 Gene: dcm Feature: domain Description: Cyt_C5_DNA_methylase Location: 365773-366694 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 365773-366694 bp Feature: gene Location: 366710-373006 bp Ori: QKH79162.1 Feature: domain Description: PHA03411 Location: 369227-369533 bp Feature: domain Description: PHA0341 1 Location: 369227-369533 bp Feature: domain Description: COG4646 Location: 369848-372512 bp Feature: domain Description: COG4646 Location: 369848-37251 2 bp Feature: domain Description: HELICc Location: 372560-372926 bp Feature: domain Description: HELICc Location: 372560-372926 bp Feature: gene Location: 373562-375232 bp Ori: QKH79163.1 Gene: ltrA Feature: domain Description: RVT_N Location: 373607-373850 bp Feature: domain Description: RVT_N Location: 373607-373850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373895-374543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373895-374543 bp Feature: domain Description: GIIM Note: maturase Location: 374597-374828 bp Feature: domain Description: GIIM Note: maturase Location: 374597-374828 bp Feature: gene Location: 375366-376694 bp Feature: gene Location: 376738-377394 bp Ori: QKH79165.1 Feature: domain Description: tRNA_anti-codon Location: 377119-377218 bp Feature: domain Description: tRNA_anti-codon Location: 3771 1 9-37721 8 bp Feature: gene Location: 414549-416219 bp Ori: QKH79193.1 Feature: domain Description: SR_TndX_transposase Location: 414624-415050 bp Feature: domain Description: SR_TndX_transposase Location: 41 4624-41 5050 bp Feature: domain Description: Recombinase Location: 415170-415512 bp Feature: domain Description: Recombinase Location: 41 51 70-41 551 2 bp Feature: gene Location: 416212-417705 bp Ori: QKH79194.1 Feature: domain Description: SR_TndX_transposase Location: 416227-416665 bp Feature: domain Description: SR_TndX_transposase Location: 41 6227-41 6665 bp Feature: domain Description: Recombinase Location: 416764-417148 bp Feature: domain Description: Recombinase Location: 41 6764-41 71 48 bp Feature: gene Location: 418217-419497 bp Ori: QKH79195.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418424-419039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 8424-41 9039 bp Feature: domain Description: GIIM Note: maturase Location: 419102-419333 bp Feature: domain Description: GIIM Note: maturase Location: 41 91 02-41 9333 bp Feature: gene Location: 419612-427444 bp Feature: domain Description: Flg_new Location: 421355-421460 bp Feature: domain Description: Flg_new Location: 421 355-421 460 bp Feature: domain Description: Flg_new Location: 421616-421778 bp Feature: domain Description: Flg_new Location: 421 61 6-421 778 bp Feature: domain Description: Flg_new Location: 424607-424724 bp Feature: domain Description: Flg_new Location: 424607-424724 bp Feature: domain Description: Flg_new Location: 424754-424958 bp Feature: domain Description: Flg_new Location: 424754-424958 bp Feature: domain Description: Flg_new Location: 425033-425192 bp Feature: domain Description: Flg_new Location: 425033-4251 92 bp Feature: domain Description: Flg_new Location: 425582-425783 bp Feature: domain Description: Flg_new Location: 425582-425783 bp Feature: domain Description: Flg_new Location: 425861-426035 bp Feature: domain Description: Flg_new Location: 425861 -426035 bp Feature: domain Description: CW_binding_2 Location: 426566-426824 bp Feature: domain Description: CW_binding_2 Location: 426566-426824 bp Feature: domain Description: CW_binding_2 Location: 426866-427133 bp Feature: domain Description: CW_binding_2 Location: 426866-4271 33 bp Feature: domain Description: CW_binding_2 Location: 427163-427406 bp Feature: domain Description: CW_binding_2 Location: 4271 63-427406 bp Feature: gene Location: 427565-428473 bp Ori: QKH79196.1 Feature: domain Description: Elp3 Location: 427628-428246 bp Feature: domain Description: Elp3 Location: 427628-428246 bp Feature: gene Location: 1509418-1509516 bp Feature: domain Description: Maff2 Location: 1509421-1509505 bp Feature: domain Description: Maff2 Location: 1 509421 -1 509505 bp Feature: gene Location: 1509517-1509606 bp Feature: gene Location: 1509668-1511527 bp Ori: QKH80190.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1509989-1510724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 509989-1 51 0724 bp Feature: domain Description: HNHc Note: nucleases Location: 1511255-1511417 bp Feature: domain Description: HNHc Note: nucleases Location: 1 51 1 255-1 51 1 41 7 bp Feature: gene Location: 1512250-1512381 bp Ori: QKH80191.1 Feature: domain Description: Maff2 Location: 1512253-1512379 bp Feature: domain Description: Maff2 Location: 1 51 2253-1 51 2379 bp Feature: gene Location: 1512383-1512694 bp Ori: QKH80192.1 Feature: domain Description: SSB_OBF Location: 1512407-1512626 bp Feature: domain Description: SSB_OBF Location: 1 51 2407-1 51 2626 bp Feature: gene Location: 1716038-1717144 bp Ori: QKH80374.1 Feature: domain Description: PRK06827 Location: 1716065-1717136 bp Feature: domain Description: PRK06827 Location: 1 71 6065-1 71 71 36 bp Feature: gene Location: 1717155-1718231 bp Ori: QKH80375.1 Feature: domain Description: PRK06358 Location: 1717167-1718229 bp Feature: domain Description: PRK06358 Location: 1 71 71 67-1 71 8229 bp Feature: gene Location: 1718307-1719587 bp Ori: QKH80376.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1718514-1719129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 851 4-1 71 91 29 bp Feature: domain Description: GIIM Note: maturase Location: 1719192-1719423 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 91 92-1 71 9423 bp Feature: gene Location: 1720114-1722900 bp Ori: QKH80377.1 Gene: fdhF Feature: domain Description: YjgC Location: 1720120-1720765 bp Feature: domain Description: YjgC Location: 1 7201 20-1 720765 bp Feature: domain Description: YjgC Location: 1720774-1722811 bp Feature: domain Description: YjgC Location: 1 720774-1 72281 1 bp Feature: gene Location: 1722908-1723363 bp Ori: QKH80378.1 Feature: domain Description: Ferritin_like_AB Location: 1722935-1723331 bp Feature: domain Description: Ferritin_like_AB Location: 1 722935-1 723331 bp Feature: gene Location: 1928551-1929414 bp Feature: gene Location: 1929416-1929514 bp Feature: domain Description: Maff2 Location: 1929419-1929509 bp Feature: domain Description: Maff2 Location: 1 92941 9-1 929509 bp Feature: gene Location: 1929667-1931526 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1929988-1930723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 929988-1 930723 bp Feature: domain Description: HNHc Note: nucleases Location: 1931257-1931416 bp Feature: domain Description: HNHc Note: nucleases Location: 1 931 257-1 931 41 6 bp Feature: gene Location: 1932273-1932404 bp Ori: QKH80538.1 Feature: domain Description: Maff2 Location: 1932276-1932402 bp Feature: domain Description: Maff2 Location: 1 932276-1 932402 bp Feature: gene Location: 1932405-1932728 bp Ori: QKH80539.1 Feature: domain Description: SSB_OBF Location: 1932432-1932663 bp Feature: domain Description: SSB_OBF Location: 1 932432-1 932663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), Maff2 (pfam12750), RVT-GII, HNHc (smart00507), Cyt_C5_DNA_methylase (cl30459), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), RVT_N (pfam13655), GIIM (pfam08388)
tRNA_anti-codon (pfam01336), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Flg_new (pfam09479), CW_binding_2 (pfam04122), Elp3 (smart00729), PRK06827 (phosphoribosylpyrophosphate synthetase; Provisional), PRK06358 (threonine-phosphate decarboxylase; Provisional), YjgC (COG3383), Ferritin_like_AB (cd01045)