myRT

myRT report for GCA_013267555.1_ASM1326755v1

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Seq: CP054003.1 Bacteroides fragilis strain FDAARGOS_763 chromosome, complete genome (5460140 bp)
Overview 1 RT 1: 789899-793376 bp 2 RT 2: 1884884-1888430 bp 3 RT 3: 2261781-2270697 bp 4 RT 4: 2884956-2888685 bp 5 RT 5: 3300934-3306560 bp 6 RT 6: 5226563-5229483 bp Neighborhood of RT #1 [789899, 793450] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Neighborhood of RT #2 [1884884, 1888444] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Neighborhood of RT #3 [2261781, 2270699] RNase_Z rpsA RVT-Retrons GlnA3 Neighborhood of RT #4 [2884956, 2888685] RVT-DGRs Neighborhood of RT #5 [3300934, 3306560] Dam RVT-DGRs Neighborhood of RT #6 [5226563, 5229483] RVT-DGRs Feature: gene Location: 789899-790222 bp Ori: QKH87237.1 Feature: domain Description: DUF4134 Location: 789923-790208 bp Feature: domain Description: DUF41 34 Location: 789923-790208 bp Feature: gene Location: 790283-790573 bp Ori: QKH83621.1 Feature: domain Description: DUF4134 Location: 790358-790556 bp Feature: domain Description: DUF41 34 Location: 790358-790556 bp Feature: gene Location: 791115-792926 bp Ori: QKH83622.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791379-792201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791 379-792201 bp Feature: domain Description: Intron_maturas2 Location: 792390-792600 bp Feature: domain Description: Intron_maturas2 Location: 792390-792600 bp Feature: domain Description: HNHc Note: nucleases Location: 792750-792855 bp Feature: domain Description: HNHc Note: nucleases Location: 792750-792855 bp Feature: gene Location: 792951-793145 bp Ori: QKH83623.1 Feature: domain Description: DUF4134 Location: 793041-793131 bp Feature: domain Description: DUF41 34 Location: 793041 -7931 31 bp Feature: gene Location: 793157-793450 bp Ori: QKH83624.1 Feature: domain Description: DUF4133 Location: 793196-793376 bp Feature: domain Description: DUF41 33 Location: 7931 96-793376 bp Feature: gene Location: 1884884-1885180 bp Ori: QKH84544.1 Feature: domain Description: DUF4133 Location: 1884926-1885103 bp Feature: domain Description: DUF41 33 Location: 1 884926-1 8851 03 bp Feature: gene Location: 1885193-1885387 bp Ori: QKH84545.1 Feature: domain Description: DUF4134 Location: 1885283-1885373 bp Feature: domain Description: DUF41 34 Location: 1 885283-1 885373 bp Feature: gene Location: 1885412-1887223 bp Ori: QKH84546.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1885676-1886498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 885676-1 886498 bp Feature: domain Description: Intron_maturas2 Location: 1886687-1886897 bp Feature: domain Description: Intron_maturas2 Location: 1 886687-1 886897 bp Feature: domain Description: HNHc Note: nucleases Location: 1887047-1887152 bp Feature: domain Description: HNHc Note: nucleases Location: 1 887047-1 8871 52 bp Feature: gene Location: 1887765-1888043 bp Ori: QKH84547.1 Feature: domain Description: DUF4134 Location: 1887825-1888026 bp Feature: domain Description: DUF41 34 Location: 1 887825-1 888026 bp Feature: gene Location: 1888118-1888444 bp Ori: QKH84548.1 Feature: domain Description: DUF4134 Location: 1888139-1888430 bp Feature: domain Description: DUF41 34 Location: 1 8881 39-1 888430 bp Feature: gene Location: 2261781-2262695 bp Ori: QKH84829.1 Feature: domain Description: RNase_Z Location: 2261796-2262687 bp Feature: domain Description: RNase_Z Location: 2261 796-2262687 bp Feature: gene Location: 2262819-2264612 bp Ori: QKH84830.1 Gene: rpsA Feature: domain Description: rpsA Location: 2262897-2264505 bp Feature: domain Description: rpsA Location: 2262897-2264505 bp Feature: gene Location: 2264754-2265869 bp Ori: QKH84831.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2265069-2265621 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2265069-2265621 bp Feature: gene Location: 2266079-2268298 bp Feature: gene Location: 2268510-2270699 bp Ori: QKH84833.1 Feature: domain Description: GlnA3 Location: 2268582-2270697 bp Feature: domain Description: GlnA3 Location: 2268582-2270697 bp Feature: gene Location: 2884956-2885228 bp Feature: gene Location: 2885380-2886537 bp Feature: gene Location: 2886897-2887907 bp Ori: QKH85295.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2887107-2887698 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28871 07-2887698 bp Feature: gene Location: 2887885-2888268 bp Feature: gene Location: 2888287-2888685 bp Feature: gene Location: 3300934-3301776 bp Ori: QKH85596.1 Feature: domain Description: Dam Location: 3300937-3301705 bp Feature: domain Description: Dam Location: 3300937-3301 705 bp Feature: gene Location: 3301963-3302373 bp Feature: gene Location: 3302387-3303730 bp Ori: QKH87326.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3302597-3303188 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3302597-33031 88 bp Feature: gene Location: 3304211-3305647 bp Feature: gene Location: 3305661-3306560 bp Feature: gene Location: 5226563-5226805 bp Feature: gene Location: 5227014-5227499 bp Feature: gene Location: 5227496-5228797 bp Ori: QKH87031.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5227709-5228303 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5227709-5228303 bp Feature: gene Location: 5228871-5229116 bp Feature: gene Location: 5229244-5229483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968), RVT-DGRs
Dam (pfam05869)