myRT

myRT report for GCA_013282195.1_ASM1328219v1

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Seq: CP047609.1 Escherichia coli strain NMBU_ W06E18 chromosome, complete genome (5248629 bp)
Overview 1 RT 1: 154497-160391 bp 2 RT 2: 845125-852270 bp 3 RT 3: 4752973-4759364 bp 4 RT 4: 4783831-4787388 bp Neighborhood of RT #1 [154497, 160528] Phage_ASH RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #2 [845125, 852278] Phage_GPA HTH_XRE RVT-Retrons FRG Q Neighborhood of RT #3 [4752973, 4759390] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Neighborhood of RT #4 [4783831, 4787413] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 154497-154967 bp Feature: gene Location: 155013-155153 bp Ori: QKI63306.1 Feature: domain Description: Phage_ASH Location: 155040-155133 bp Feature: domain Description: Phage_ASH Location: 1 55040-1 551 33 bp Feature: gene Location: 155314-158523 bp Ori: QKI63307.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 155842-156331 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 55842-1 56331 bp Feature: domain Description: nitrilase Location: 157837-158434 bp Feature: domain Description: nitrilase Location: 1 57837-1 58434 bp Feature: gene Location: 158818-159621 bp Ori: QKI63308.1 Feature: domain Description: AbiEi_3_N Location: 158851-159112 bp Feature: domain Description: AbiEi_3_N Location: 1 58851 -1 591 1 2 bp Feature: domain Description: AbiEi_3 Location: 159124-159580 bp Feature: domain Description: AbiEi_3 Location: 1 591 24-1 59580 bp Feature: gene Location: 159608-160528 bp Ori: QKI63309.1 Feature: domain Description: AbiEii Location: 159650-160391 bp Feature: domain Description: AbiEii Location: 1 59650-1 60391 bp Feature: gene Location: 845125-847413 bp Ori: QKI63865.1 Feature: domain Description: Phage_GPA Location: 845524-846511 bp Feature: domain Description: Phage_GPA Location: 845524-84651 1 bp Feature: gene Location: 848022-848342 bp Ori: QKI63866.1 Feature: domain Description: HTH_XRE Location: 848037-848196 bp Feature: domain Description: HTH_XRE Location: 848037-8481 96 bp Feature: gene Location: 848308-849258 bp Ori: QKI63867.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 848488-849031 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 848488-849031 bp Feature: gene Location: 849367-850731 bp Ori: QKI63868.1 Feature: domain Description: FRG Location: 849934-850219 bp Feature: domain Description: FRG Location: 849934-85021 9 bp Feature: gene Location: 851244-852278 bp Ori: QKI63869.1 Feature: domain Description: Q Location: 851247-852270 bp Feature: domain Description: Q Location: 851 247-852270 bp Feature: gene Location: 4752973-4754028 bp Ori: QKI67291.1 Feature: domain Description: YesN Location: 4752976-4753375 bp Feature: domain Description: YesN Location: 4752976-4753375 bp Feature: domain Description: YesN Location: 4753708-4754005 bp Feature: domain Description: YesN Location: 4753708-4754005 bp Feature: gene Location: 4754045-4755274 bp Ori: QKI67292.1 Feature: domain Description: YesM Location: 4754525-4755266 bp Feature: domain Description: YesM Location: 4754525-4755266 bp Feature: gene Location: 4755857-4756378 bp Ori: QKI67293.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4755863-4756145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4755863-47561 45 bp Feature: domain Description: GIIM Note: maturase Location: 4756193-4756373 bp Feature: domain Description: GIIM Note: maturase Location: 47561 93-4756373 bp Feature: gene Location: 4756554-4756945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4756884-4756944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4756884-4756944 bp Feature: gene Location: 4757431-4758336 bp Feature: gene Location: 4758473-4759390 bp Ori: QKI67295.1 Feature: domain Description: PFLE_PFLC Location: 4758509-4759364 bp Feature: domain Description: PFLE_PFLC Location: 4758509-4759364 bp Feature: gene Location: 4783831-4784214 bp Feature: domain Description: PHA02517 Location: 4783861-4784215 bp Feature: domain Description: PHA0251 7 Location: 4783861 -478421 5 bp Feature: gene Location: 4784207-4784578 bp Feature: gene Location: 4784887-4786395 bp Ori: QKI67921.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4785145-4785877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47851 45-4785877 bp Feature: domain Description: GIIM Note: maturase Location: 4785952-4786150 bp Feature: domain Description: GIIM Note: maturase Location: 4785952-47861 50 bp Feature: gene Location: 4786485-4786958 bp Feature: domain Description: PHA02517 Location: 4786491-4786956 bp Feature: domain Description: PHA0251 7 Location: 4786491 -4786956 bp Feature: gene Location: 4787094-4787413 bp Feature: domain Description: InsE Location: 4787103-4787388 bp Feature: domain Description: InsE Location: 47871 03-4787388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_ASH (pfam10554), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843), Phage_GPA (pfam05840), HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)
Q (PHA02536), YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)