myRT

myRT report for GCA_013282275.1_ASM1328227v1

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Seq: CP042881.1 Escherichia coli strain NMBU_W05E18 plasmid pNMBU-W05E18_03, complete sequence (66300 bp)
Overview 1 RT 1: 38849-44923 bp Neighborhood of RT #1 [38849, 44979] ParE RVT-GII GIIM Rve DDE_Tnp_IS240 PinE PRK15442 RVT-GII Rve Feature: gene Location: 38849-39130 bp Feature: domain Description: ParE Location: 38852-39128 bp Feature: domain Description: ParE Location: 38852-391 28 bp Feature: gene Location: 39127-39282 bp Feature: gene Location: 39386-40031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39389-39671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39389-39671 bp Feature: domain Description: GIIM Note: maturase Location: 39788-39956 bp Feature: domain Description: GIIM Note: maturase Location: 39788-39956 bp Feature: gene Location: 40097-40801 bp Ori: QKI42817.1 Feature: domain Description: Rve Location: 40100-40745 bp Feature: domain Description: Rve Location: 401 00-40745 bp Feature: gene Location: 40872-41042 bp Ori: QKI42839.1 Feature: domain Description: DDE_Tnp_IS240 Location: 40875-40974 bp Feature: domain Description: DDE_Tnp_IS240 Location: 40875-40974 bp Feature: gene Location: 41313-41870 bp Ori: QKI42818.1 Feature: domain Description: PinE Location: 41316-41862 bp Feature: domain Description: PinE Location: 41 31 6-41 862 bp Feature: gene Location: 42053-42913 bp Ori: QKI42819.1 Feature: domain Description: PRK15442 Location: 42062-42911 bp Feature: domain Description: PRK1 5442 Location: 42062-4291 1 bp Feature: gene Location: 43530-44222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43815-44223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4381 5-44223 bp Feature: gene Location: 44204-44329 bp Feature: gene Location: 44275-44979 bp Ori: QKI42820.1 Feature: domain Description: Rve Location: 44278-44923 bp Feature: domain Description: Rve Location: 44278-44923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), RVT-GII, GIIM (pfam08388), Rve (COG3316), DDE_Tnp_IS240 (pfam13610), PinE (COG1961), PRK15442 (beta-lactamase TEM; Provisional)

Seq: CP042878.1 Escherichia coli strain NMBU_W05E18 chromosome, complete genome (5299922 bp)
Overview 1 RT 1: 114146-118090 bp 2 RT 2: 980781-984380 bp 3 RT 3: 4135241-4141272 bp Neighborhood of RT #1 [114146, 118502] TetR_N TetR_C_28 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [980781, 984380] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [4135241, 4141272] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 114146-114724 bp Ori: QKI37771.1 Feature: domain Description: TetR_N Location: 114215-114350 bp Feature: domain Description: TetR_N Location: 1142 15-114350 bp Feature: domain Description: TetR_C_28 Location: 114425-114713 bp Feature: domain Description: TetR_C_2 8 Location: 11442 5-114713 bp Feature: gene Location: 115015-115492 bp Feature: domain Description: PHA02517 Location: 115021-115318 bp Feature: domain Description: PHA02 517 Location: 11502 1-115318 bp Feature: gene Location: 115582-117090 bp Ori: QKI42375.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115840-116572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115840-116572 bp Feature: domain Description: GIIM Note: maturase Location: 116647-116845 bp Feature: domain Description: GIIM Note: maturase Location: 116647-116845 bp Feature: gene Location: 117399-117770 bp Feature: gene Location: 117763-118502 bp Feature: domain Description: InsE Location: 117766-118090 bp Feature: domain Description: InsE Location: 117766-118090 bp Feature: gene Location: 980781-981521 bp Feature: domain Description: InsE Location: 980784-981123 bp Feature: domain Description: InsE Location: 980784-98112 3 bp Feature: domain Description: PHA02517 Location: 981237-981522 bp Feature: domain Description: PHA02 517 Location: 9812 37-98152 2 bp Feature: gene Location: 981514-981885 bp Feature: gene Location: 982194-983702 bp Ori: QKI42407.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982452-983184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982 452 -983184 bp Feature: domain Description: GIIM Note: maturase Location: 983259-983457 bp Feature: domain Description: GIIM Note: maturase Location: 9832 59-983457 bp Feature: gene Location: 983792-984178 bp Feature: domain Description: PHA02517 Location: 983798-984176 bp Feature: domain Description: PHA02 517 Location: 983798-984176 bp Feature: gene Location: 984147-984380 bp Feature: gene Location: 4135241-4136161 bp Ori: QKI41387.1 Feature: domain Description: AbiEii Location: 4135283-4136024 bp Feature: domain Description: AbiEii Location: 41352 83-413602 4 bp Feature: gene Location: 4136148-4136951 bp Ori: QKI41388.1 Feature: domain Description: AbiEi_3_N Location: 4136181-4136442 bp Feature: domain Description: AbiEi_3_N Location: 4136181-4136442 bp Feature: domain Description: AbiEi_3 Location: 4136454-4136910 bp Feature: domain Description: AbiEi_3 Location: 4136454-4136910 bp Feature: gene Location: 4137246-4140455 bp Ori: QKI41389.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4137774-4138263 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4137774-41382 63 bp Feature: domain Description: nitrilase Location: 4139769-4140366 bp Feature: domain Description: nitrilase Location: 4139769-4140366 bp Feature: gene Location: 4140616-4140756 bp Ori: QKI41390.1 Feature: domain Description: Phage_ASH Location: 4140643-4140736 bp Feature: domain Description: Phage_ASH Location: 4140643-4140736 bp Feature: gene Location: 4140802-4141272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetR_N (pfam00440), TetR_C_28 (pfam17937), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5
nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: CP042879.1 Escherichia coli strain NMBU_W05E18 plasmid pNMBU-W05E18_01, complete sequence (132874 bp)
Overview 1 RT 1: 5968-9011 bp 2 RT 2: 22584-26363 bp Neighborhood of RT #1 [5968, 9428] PHA02517 GIIM YkfC RVT-GII InsE Neighborhood of RT #2 [22584, 26368] PHA02517 YkfC RVT-GII GIIM InsE rve_2 Feature: gene Location: 5968-6436 bp Feature: domain Description: PHA02517 Location: 5974-6037 bp Feature: domain Description: PHA02517 Location: 5974-603 7 bp Feature: gene Location: 6526-7010 bp Feature: domain Description: GIIM Note: maturase Location: 6571-6787 bp Feature: domain Description: GIIM Note: maturase Location: 6571-6787 bp Feature: gene Location: 7211-8027 bp Feature: domain Description: YkfC Location: 7214-7343 bp Feature: domain Description: YkfC Location: 7214-73 43 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7484-7580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7484-7580 bp Feature: gene Location: 8331-8700 bp Feature: gene Location: 8693-9428 bp Feature: domain Description: InsE Location: 8696-9011 bp Feature: domain Description: InsE Location: 8696-9011 bp Feature: gene Location: 22584-22940 bp Feature: domain Description: PHA02517 Location: 22593-22941 bp Feature: domain Description: PHA02517 Location: 22593 -22941 bp Feature: gene Location: 22933-23303 bp Feature: gene Location: 23610-24428 bp Feature: domain Description: YkfC Location: 23613-23742 bp Feature: domain Description: YkfC Location: 23 613 -23 742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24021-24321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24021-243 21 bp Feature: gene Location: 24632-25115 bp Feature: domain Description: GIIM Note: maturase Location: 24677-24893 bp Feature: domain Description: GIIM Note: maturase Location: 24677-24893 bp Feature: gene Location: 25343-26368 bp Feature: domain Description: InsE Location: 25364-25637 bp Feature: domain Description: InsE Location: 253 64-2563 7 bp Feature: domain Description: rve_2 Location: 26237-26363 bp Feature: domain Description: rve_2 Location: 2623 7-263 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), YkfC (COG3344), RVT-GII, InsE (COG2963), rve_2 (pfam13333)