myRT

myRT report for GCA_013282315.1_ASM1328231v1

Download annotations/find similar RTs

Seq: CP042885.1 Escherichia coli O10:H32 strain NMBU-W12E19 plasmid pNMBU-W12E19_01, complete sequence (167966 bp)
Overview 1 RT 1: 95130-98343 bp Neighborhood of RT #1 [95130, 98740] TnpB_IS66 PHA02517 RVT-GII GIIM InsE Feature: gene Location: 95130-95291 bp Ori: QKI48138.1 Feature: domain Description: TnpB_IS66 Location: 95211-95280 bp Feature: domain Description: TnpB_IS66 Location: 9521 1 -95280 bp Feature: gene Location: 95257-95730 bp Feature: domain Description: PHA02517 Location: 95263-95728 bp Feature: domain Description: PHA0251 7 Location: 95263-95728 bp Feature: gene Location: 95820-97328 bp Ori: QKI48192.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96078-96810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96078-9681 0 bp Feature: domain Description: GIIM Note: maturase Location: 96885-97083 bp Feature: domain Description: GIIM Note: maturase Location: 96885-97083 bp Feature: gene Location: 97637-98008 bp Feature: gene Location: 98001-98740 bp Feature: domain Description: InsE Location: 98004-98343 bp Feature: domain Description: InsE Location: 98004-98343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CP042892.1 Escherichia coli O10:H32 strain NMBU-W12E19 chromosome, complete genome (5165075 bp)
Overview 1 RT 1: 46908-50546 bp 2 RT 2: 59516-62824 bp 3 RT 3: 2112334-2116494 bp 4 RT 4: 3972324-3976842 bp Neighborhood of RT #1 [46908, 50575] Phage_antitermQ PHA02517 RVT-GII GIIM DDE_Tnp_1_5 YkfC Neighborhood of RT #2 [59516, 63221] GnsAB_toxin PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [2112334, 2116493] DNA2 PLDc_yjhR_C_like PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3972324, 3976844] PRK09678 InsG RVT-Retrons SmpB PRK10724 Feature: gene Location: 46908-47285 bp Ori: QKI48532.1 Feature: domain Description: Phage_antitermQ Location: 46911-47262 bp Feature: domain Description: Phage_antitermQ Location: 46911-472 62 bp Feature: gene Location: 47455-47922 bp Feature: domain Description: PHA02517 Location: 47458-47917 bp Feature: domain Description: PHA02 517 Location: 47458-47917 bp Feature: gene Location: 48003-49253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48006-48735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48006-48735 bp Feature: domain Description: GIIM Note: maturase Location: 48810-49008 bp Feature: domain Description: GIIM Note: maturase Location: 48810-49008 bp Feature: gene Location: 49310-50233 bp Ori: QKI48533.1 Feature: domain Description: DDE_Tnp_1_5 Location: 49367-49700 bp Feature: domain Description: DDE_Tnp_1_5 Location: 49367-49700 bp Feature: gene Location: 50279-50575 bp Ori: QKI53009.1 Feature: domain Description: YkfC Location: 50282-50546 bp Feature: domain Description: YkfC Location: 502 82 -50546 bp Feature: gene Location: 59516-59689 bp Ori: QKI53013.1 Feature: domain Description: GnsAB_toxin Location: 59519-59678 bp Feature: domain Description: GnsAB_toxin Location: 59519-59678 bp Feature: gene Location: 59738-60211 bp Feature: domain Description: PHA02517 Location: 59744-60209 bp Feature: domain Description: PHA02 517 Location: 59744-602 09 bp Feature: gene Location: 60301-61809 bp Ori: QKI53014.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60559-61291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60559-612 91 bp Feature: domain Description: GIIM Note: maturase Location: 61366-61564 bp Feature: domain Description: GIIM Note: maturase Location: 61366-61564 bp Feature: gene Location: 62118-62489 bp Feature: gene Location: 62482-63221 bp Feature: domain Description: InsE Location: 62485-62824 bp Feature: domain Description: InsE Location: 62 485-62 82 4 bp Feature: gene Location: 2112334-2113377 bp Ori: QKI50344.1 Feature: domain Description: DNA2 Location: 2112403-2112781 bp Feature: domain Description: DNA2 Location: 2 112 403-2 112 781 bp Feature: domain Description: PLDc_yjhR_C_like Location: 2112925-2113369 bp Feature: domain Description: PLDc_yjhR_C_like Location: 2 112 92 5-2 113369 bp Feature: gene Location: 2113439-2113926 bp Feature: domain Description: PHA02517 Location: 2113442-2113613 bp Feature: domain Description: PHA02 517 Location: 2 113442 -2 113613 bp Feature: gene Location: 2114007-2115515 bp Ori: QKI53114.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2114265-2114997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1142 65-2 114997 bp Feature: domain Description: GIIM Note: maturase Location: 2115072-2115270 bp Feature: domain Description: GIIM Note: maturase Location: 2 115072 -2 1152 70 bp Feature: gene Location: 2115824-2116192 bp Feature: gene Location: 2116188-2116493 bp Feature: domain Description: PHA02517 Location: 2116191-2116494 bp Feature: domain Description: PHA02 517 Location: 2 116191-2 116494 bp Feature: gene Location: 3972324-3972542 bp Ori: QKI51956.1 Feature: domain Description: PRK09678 Location: 3972327-3972525 bp Feature: domain Description: PRK09678 Location: 3972 32 7-3972 52 5 bp Feature: gene Location: 3972802-3973914 bp Ori: QKI51957.1 Feature: domain Description: InsG Location: 3972805-3973843 bp Feature: domain Description: InsG Location: 3972 805-3973843 bp Feature: gene Location: 3974295-3975068 bp Ori: QKI51958.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3974355-3974889 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3974355-3974889 bp Feature: gene Location: 3975754-3976236 bp Ori: QKI51959.1 Gene: smpB Feature: domain Description: SmpB Location: 3975784-3976231 bp Feature: domain Description: SmpB Location: 3975784-39762 31 bp Feature: gene Location: 3976368-3976844 bp Ori: QKI51960.1 Gene: ratA Feature: domain Description: PRK10724 Location: 3976374-3976842 bp Feature: domain Description: PRK1072 4 Location: 3976374-3976842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_antitermQ (pfam06530), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_5 (pfam13737), YkfC (COG3344), GnsAB_toxin (pfam08178), InsE (COG2963), DNA2 (COG1112), PLDc_yjhR_C_like (cd09118)
PRK09678 (DNA-binding transcriptional regulator; Provisional), InsG (COG3385), RVT-Retrons, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)