myRT

myRT report for GCA_013282335.1_ASM1328233v1

Download annotations/find similar RTs

Seq: CP043406.1 Escherichia coli strain NMBU-W13E19 chromosome, complete genome (5127396 bp)
Overview 1 RT 1: 1-7146 bp 2 RT 2: 2131558-2134850 bp 3 RT 3: 2197947-2201994 bp 4 RT 4: 2211173-2216769 bp 5 RT 5: 2663067-2666462 bp 6 RT 6: 2671121-2674477 bp 7 RT 7: 3122547-3126395 bp 8 RT 8: 4115144-4118417 bp 9 RT 9: 4132399-4134107 bp Neighborhood of RT #1 [1, 7154] Phage_GPA HTH_XRE RVT-Retrons FRG Q Neighborhood of RT #2 [2131558, 2135250] PRK11433 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [2197947, 2202086] InsE RVT-GII GIIM PHA02517 RAYT Neighborhood of RT #4 [2211173, 2216769] YhhI YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Neighborhood of RT #5 [2663067, 2666461] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #6 [2671121, 2674906] DUF2254 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #7 [3122547, 3126395] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #8 [4115144, 4118814] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #9 [4132399, 4134166] InsE RVT-GII trans_reg_C Feature: gene Location: 1-2289 bp Ori: QKI53222.1 Feature: domain Description: Phage_GPA Location: 400-1387 bp Feature: domain Description: Phage_GPA Location: 400-1 387 bp Feature: gene Location: 2898-3218 bp Ori: QKI53223.1 Feature: domain Description: HTH_XRE Location: 2913-3072 bp Feature: domain Description: HTH_XRE Location: 291 3-3072 bp Feature: gene Location: 3184-4134 bp Ori: QKI53224.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3364-3907 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3364-3907 bp Feature: gene Location: 4243-5607 bp Ori: QKI53225.1 Feature: domain Description: FRG Location: 4810-5095 bp Feature: domain Description: FRG Location: 481 0-5095 bp Feature: gene Location: 6120-7154 bp Ori: QKI53226.1 Feature: domain Description: Q Location: 6123-7146 bp Feature: domain Description: Q Location: 61 23-71 46 bp Feature: gene Location: 2131558-2131797 bp Ori: QKI55187.1 Feature: domain Description: PRK11433 Location: 2131597-2131768 bp Feature: domain Description: PRK1 1 433 Location: 21 31 597-21 31 768 bp Feature: gene Location: 2131767-2132255 bp Feature: domain Description: PHA02517 Location: 2131770-2132226 bp Feature: domain Description: PHA0251 7 Location: 21 31 770-21 32226 bp Feature: gene Location: 2132336-2133844 bp Ori: QKI55188.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2132594-2133326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 32594-21 33326 bp Feature: domain Description: GIIM Note: maturase Location: 2133401-2133599 bp Feature: domain Description: GIIM Note: maturase Location: 21 33401 -21 33599 bp Feature: gene Location: 2134153-2134524 bp Feature: gene Location: 2134517-2135250 bp Feature: domain Description: InsE Location: 2134556-2134850 bp Feature: domain Description: InsE Location: 21 34556-21 34850 bp Feature: gene Location: 2197947-2198680 bp Feature: domain Description: InsE Location: 2197986-2198280 bp Feature: domain Description: InsE Location: 21 97986-21 98280 bp Feature: gene Location: 2198673-2199044 bp Feature: gene Location: 2199353-2200861 bp Ori: QKI55255.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2199611-2200343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 9961 1 -2200343 bp Feature: domain Description: GIIM Note: maturase Location: 2200418-2200616 bp Feature: domain Description: GIIM Note: maturase Location: 220041 8-220061 6 bp Feature: gene Location: 2200942-2201430 bp Feature: domain Description: PHA02517 Location: 2200945-2201401 bp Feature: domain Description: PHA0251 7 Location: 2200945-2201 401 bp Feature: gene Location: 2201589-2202086 bp Ori: QKI55256.1 Gene: rayT Feature: domain Description: RAYT Location: 2201592-2201994 bp Feature: domain Description: RAYT Location: 2201 592-2201 994 bp Feature: gene Location: 2211173-2212309 bp Ori: QKI55267.1 Feature: domain Description: YhhI Location: 2211176-2211539 bp Feature: domain Description: YhhI Location: 221 1 1 76-221 1 539 bp Feature: domain Description: YhhI Location: 2211596-2211950 bp Feature: domain Description: YhhI Location: 221 1 596-221 1 950 bp Feature: domain Description: YhhI Location: 2211968-2212211 bp Feature: domain Description: YhhI Location: 221 1 968-221 221 1 bp Feature: gene Location: 2212485-2212679 bp Feature: domain Description: YhhI Location: 2212494-2212665 bp Feature: domain Description: YhhI Location: 221 2494-221 2665 bp Feature: gene Location: 2212756-2214006 bp Ori: QKI55268.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2212960-2213617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 2960-221 361 7 bp Feature: domain Description: GIIM Note: maturase Location: 2213698-2213920 bp Feature: domain Description: GIIM Note: maturase Location: 221 3698-221 3920 bp Feature: gene Location: 2214538-2215494 bp Ori: QKI55269.1 Feature: domain Description: YhhI Location: 2214541-2214886 bp Feature: domain Description: YhhI Location: 221 4541 -221 4886 bp Feature: domain Description: YhhI Location: 2214943-2215297 bp Feature: domain Description: YhhI Location: 221 4943-221 5297 bp Feature: domain Description: YhhI Location: 2215297-2215477 bp Feature: domain Description: YhhI Location: 221 5297-221 5477 bp Feature: gene Location: 2215807-2216769 bp Feature: gene Location: 2663067-2663324 bp Feature: gene Location: 2663407-2663894 bp Feature: domain Description: PHA02517 Location: 2663410-2663581 bp Feature: domain Description: PHA0251 7 Location: 266341 0-2663581 bp Feature: gene Location: 2663975-2665483 bp Ori: QKI55644.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2664233-2664965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2664233-2664965 bp Feature: domain Description: GIIM Note: maturase Location: 2665040-2665238 bp Feature: domain Description: GIIM Note: maturase Location: 2665040-2665238 bp Feature: gene Location: 2665792-2666160 bp Feature: gene Location: 2666156-2666461 bp Feature: domain Description: PHA02517 Location: 2666159-2666462 bp Feature: domain Description: PHA0251 7 Location: 26661 59-2666462 bp Feature: gene Location: 2671121-2671534 bp Ori: QKI55648.1 Feature: domain Description: DUF2254 Location: 2671163-2671460 bp Feature: domain Description: DUF2254 Location: 2671 1 63-2671 460 bp Feature: gene Location: 2671469-2671957 bp Feature: domain Description: PHA02517 Location: 2671472-2671946 bp Feature: domain Description: PHA0251 7 Location: 2671 472-2671 946 bp Feature: gene Location: 2672038-2673546 bp Ori: QKI55649.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2672296-2673028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2672296-2673028 bp Feature: domain Description: GIIM Note: maturase Location: 2673103-2673301 bp Feature: domain Description: GIIM Note: maturase Location: 26731 03-2673301 bp Feature: gene Location: 2673855-2674223 bp Feature: gene Location: 2674219-2674906 bp Feature: domain Description: InsE Location: 2674228-2674477 bp Feature: domain Description: InsE Location: 2674228-2674477 bp Feature: gene Location: 3122547-3123280 bp Feature: domain Description: InsE Location: 3122586-3122880 bp Feature: domain Description: InsE Location: 31 22586-31 22880 bp Feature: gene Location: 3123273-3123644 bp Feature: gene Location: 3123953-3125461 bp Ori: QKI56032.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3124211-3124943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 2421 1 -31 24943 bp Feature: domain Description: GIIM Note: maturase Location: 3125018-3125216 bp Feature: domain Description: GIIM Note: maturase Location: 31 2501 8-31 2521 6 bp Feature: gene Location: 3125542-3126030 bp Feature: domain Description: PHA02517 Location: 3125545-3126001 bp Feature: domain Description: PHA0251 7 Location: 31 25545-31 26001 bp Feature: gene Location: 3126000-3126395 bp Feature: gene Location: 4115144-4115365 bp Feature: gene Location: 4115331-4115804 bp Feature: domain Description: PHA02517 Location: 4115337-4115802 bp Feature: domain Description: PHA0251 7 Location: 41 1 5337-41 1 5802 bp Feature: gene Location: 4115894-4117402 bp Ori: QKI56909.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4116152-4116884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 61 52-41 1 6884 bp Feature: domain Description: GIIM Note: maturase Location: 4116959-4117157 bp Feature: domain Description: GIIM Note: maturase Location: 41 1 6959-41 1 71 57 bp Feature: gene Location: 4117711-4118082 bp Feature: gene Location: 4118075-4118814 bp Feature: domain Description: InsE Location: 4118078-4118417 bp Feature: domain Description: InsE Location: 41 1 8078-41 1 841 7 bp Feature: gene Location: 4132399-4132723 bp Ori: QKI56922.1 Feature: domain Description: InsE Location: 4132402-4132723 bp Feature: domain Description: InsE Location: 41 32402-41 32723 bp Feature: gene Location: 4131510-4132399 bp Feature: gene Location: 4132879-4133108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4132888-4132981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 32888-41 32981 bp Feature: gene Location: 4133225-4133566 bp Feature: gene Location: 4133864-4134166 bp Ori: QKI56924.1 Feature: domain Description: trans_reg_C Location: 4133912-4134107 bp Feature: domain Description: trans_reg_C Location: 41 3391 2-41 341 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901), Q (PHA02536), PRK11433 (aldehyde oxidoreductase 2Fe-2S subunit; Provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)
RAYT (COG1943), YhhI (COG5433), DUF2254 (pfam10011), trans_reg_C (cd00383)