myRT

myRT report for GCA_013282355.1_ASM1328235v1

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Seq: CP044404.1 Escherichia coli strain NMBU-W10C18 plasmid pNMBU-W10C18_01, complete sequence (114329 bp)
Overview 1 RT 1: 5681-9759 bp Neighborhood of RT #1 [5681, 9767] ParE RVT-GII GIIM PRK15442 PinE Feature: gene Location: 5681-5962 bp Feature: domain Description: ParE Location: 5684-5960 bp Feature: domain Description: ParE Location: 5684-5960 bp Feature: gene Location: 5959-6114 bp Feature: gene Location: 6218-7550 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6503-7190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6503-71 90 bp Feature: domain Description: GIIM Note: maturase Location: 7307-7475 bp Feature: domain Description: GIIM Note: maturase Location: 7307-7475 bp Feature: gene Location: 8167-9027 bp Ori: QKI62973.1 Feature: domain Description: PRK15442 Location: 8176-9025 bp Feature: domain Description: PRK1 5442 Location: 81 76-9025 bp Feature: gene Location: 9210-9767 bp Ori: QKI62974.1 Feature: domain Description: PinE Location: 9213-9759 bp Feature: domain Description: PinE Location: 921 3-9759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), RVT-GII, GIIM (pfam08388), PRK15442 (beta-lactamase TEM; Provisional), PinE (COG1961)

Seq: CP044403.1 Escherichia coli strain NMBU-W10C18 chromosome, complete genome (5133330 bp)
Overview 1 RT 1: 471530-475821 bp 2 RT 2: 501316-504873 bp 3 RT 3: 664700-668411 bp 4 RT 4: 671922-675316 bp 5 RT 5: 1127777-1133671 bp 6 RT 6: 1818573-1825099 bp Neighborhood of RT #1 [471530, 475821] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #2 [501316, 504898] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [664700, 668485] InsE RVT-GII GIIM PHA02517 DUF2254 Neighborhood of RT #4 [671922, 675316] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [1127777, 1133808] Phage_ASH RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #6 [1818573, 1825107] Phage_GPA HTH_XRE RVT-Retrons FRG Q Feature: gene Location: 471530-472759 bp Ori: QKI58673.1 Feature: domain Description: YesM Location: 472010-472751 bp Feature: domain Description: YesM Location: 472 010-472 751 bp Feature: gene Location: 472832-473020 bp Feature: gene Location: 473342-473863 bp Ori: QKI62763.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473348-473630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473348-473630 bp Feature: domain Description: GIIM Note: maturase Location: 473678-473858 bp Feature: domain Description: GIIM Note: maturase Location: 473678-473858 bp Feature: gene Location: 474039-474430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 474369-474429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 474369-47442 9 bp Feature: gene Location: 474655-474942 bp Feature: gene Location: 474916-475821 bp Feature: gene Location: 501316-501699 bp Feature: domain Description: PHA02517 Location: 501346-501700 bp Feature: domain Description: PHA02 517 Location: 501346-501700 bp Feature: gene Location: 501692-502063 bp Feature: gene Location: 502372-503880 bp Ori: QKI62767.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502630-503362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502 630-503362 bp Feature: domain Description: GIIM Note: maturase Location: 503437-503635 bp Feature: domain Description: GIIM Note: maturase Location: 503437-503635 bp Feature: gene Location: 503970-504443 bp Feature: domain Description: PHA02517 Location: 503976-504441 bp Feature: domain Description: PHA02 517 Location: 503976-504441 bp Feature: gene Location: 504579-504898 bp Feature: domain Description: InsE Location: 504588-504873 bp Feature: domain Description: InsE Location: 504588-504873 bp Feature: gene Location: 664700-665387 bp Feature: domain Description: InsE Location: 664709-664958 bp Feature: domain Description: InsE Location: 664709-664958 bp Feature: gene Location: 665383-665751 bp Feature: gene Location: 666060-667568 bp Ori: QKI62773.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666318-667050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666318-667050 bp Feature: domain Description: GIIM Note: maturase Location: 667125-667323 bp Feature: domain Description: GIIM Note: maturase Location: 66712 5-66732 3 bp Feature: gene Location: 667649-668137 bp Feature: domain Description: PHA02517 Location: 667652-668126 bp Feature: domain Description: PHA02 517 Location: 667652 -66812 6 bp Feature: gene Location: 668072-668485 bp Ori: QKI58841.1 Feature: domain Description: DUF2254 Location: 668114-668411 bp Feature: domain Description: DUF2 2 54 Location: 668114-668411 bp Feature: gene Location: 671922-672227 bp Feature: domain Description: PHA02517 Location: 671925-672228 bp Feature: domain Description: PHA02 517 Location: 67192 5-672 2 2 8 bp Feature: gene Location: 672223-672591 bp Feature: gene Location: 672900-674408 bp Ori: QKI62774.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673158-673890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673158-673890 bp Feature: domain Description: GIIM Note: maturase Location: 673965-674163 bp Feature: domain Description: GIIM Note: maturase Location: 673965-674163 bp Feature: gene Location: 674489-674976 bp Feature: domain Description: PHA02517 Location: 674492-674663 bp Feature: domain Description: PHA02 517 Location: 674492 -674663 bp Feature: gene Location: 675059-675316 bp Feature: gene Location: 1127777-1128247 bp Feature: gene Location: 1128293-1128433 bp Ori: QKI59233.1 Feature: domain Description: Phage_ASH Location: 1128320-1128413 bp Feature: domain Description: Phage_ASH Location: 112 832 0-112 8413 bp Feature: gene Location: 1128594-1131803 bp Ori: QKI59234.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1129122-1129611 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 112 912 2 -112 9611 bp Feature: domain Description: nitrilase Location: 1131117-1131714 bp Feature: domain Description: nitrilase Location: 1131117-1131714 bp Feature: gene Location: 1132098-1132901 bp Ori: QKI59235.1 Feature: domain Description: AbiEi_3_N Location: 1132131-1132392 bp Feature: domain Description: AbiEi_3_N Location: 1132 131-1132 392 bp Feature: domain Description: AbiEi_3 Location: 1132404-1132860 bp Feature: domain Description: AbiEi_3 Location: 1132 404-1132 860 bp Feature: gene Location: 1132888-1133808 bp Ori: QKI59236.1 Feature: domain Description: AbiEii Location: 1132930-1133671 bp Feature: domain Description: AbiEii Location: 1132 930-1133671 bp Feature: gene Location: 1818573-1820173 bp Feature: domain Description: Phage_GPA Location: 1818579-1818744 bp Feature: domain Description: Phage_GPA Location: 1818579-1818744 bp Feature: gene Location: 1820851-1821171 bp Ori: QKI59799.1 Feature: domain Description: HTH_XRE Location: 1820866-1821025 bp Feature: domain Description: HTH_XRE Location: 182 0866-182 102 5 bp Feature: gene Location: 1821137-1822087 bp Ori: QKI59800.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1821317-1821860 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 182 1317-182 1860 bp Feature: gene Location: 1822196-1823560 bp Ori: QKI59801.1 Feature: domain Description: FRG Location: 1822763-1823048 bp Feature: domain Description: FRG Location: 182 2 763-182 3048 bp Feature: gene Location: 1824073-1825107 bp Ori: QKI59802.1 Feature: domain Description: Q Location: 1824076-1825099 bp Feature: domain Description: Q Location: 182 4076-182 5099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), DUF2254 (pfam10011), Phage_ASH (pfam10554), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194)
AbiEi_3 (pfam11459), AbiEii (pfam08843), Phage_GPA (pfam05840), HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901), Q (PHA02536)