myRT

myRT report for GCA_013284015.1_ASM1328401v1

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Seq: CP054160.1 Serratia fonticola strain Biosolid 3 chromosome, complete genome (5842462 bp)
Overview 1 RT 1: 2465307-2471376 bp 2 RT 2: 4550711-4554499 bp 3 RT 3: 4712868-4716911 bp 4 RT 4: 5048697-5055138 bp Neighborhood of RT #1 [2465307, 2471378] TIGR02646 COG3950 RVT-Retrons ghrA Neighborhood of RT #2 [4550711, 4554513] STAS_anti-anti-sigma_factors RVT-GII PRK09290 PucG Neighborhood of RT #3 [4712868, 4716913] RVT-UG4 FimA PRK15287 Neighborhood of RT #4 [5048697, 5055140] Autoind_bind RVT-UG4 RVT-UG4 FimA PRK15287 Feature: gene Location: 2465307-2466050 bp Ori: QKJ58872.1 Feature: domain Description: TIGR02646 Location: 2465406-2465916 bp Feature: domain Description: TIGR02646 Location: 2465406-246591 6 bp Feature: gene Location: 2466050-2467675 bp Ori: QKJ58873.1 Feature: domain Description: COG3950 Location: 2466224-2467577 bp Feature: domain Description: COG3950 Location: 2466224-2467577 bp Feature: gene Location: 2467659-2468613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2467758-2468154 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2467758-24681 54 bp Feature: gene Location: 2469299-2469718 bp Feature: gene Location: 2470437-2471378 bp Ori: QKJ58875.1 Gene: ghrA Feature: domain Description: ghrA Location: 2470443-2471376 bp Feature: domain Description: ghrA Location: 2470443-2471 376 bp Feature: gene Location: 4550711-4551043 bp Ori: QKJ60362.1 Feature: domain Description: STAS_anti-anti-sigma_factors Location: 4550723-4551008 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 4550723-4551 008 bp Feature: gene Location: 4551119-4551265 bp Feature: gene Location: 4551665-4551907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4551713-4551875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4551 71 3-4551 875 bp Feature: gene Location: 4551986-4553272 bp Ori: QKJ61531.1 Gene: hpxK Feature: domain Description: PRK09290 Location: 4552019-4553219 bp Feature: domain Description: PRK09290 Location: 455201 9-455321 9 bp Feature: gene Location: 4553272-4554513 bp Ori: QKJ60364.1 Feature: domain Description: PucG Location: 4553311-4554499 bp Feature: domain Description: PucG Location: 455331 1 -4554499 bp Feature: gene Location: 4712868-4713344 bp Feature: gene Location: 4713863-4714729 bp Feature: gene Location: 4714933-4715808 bp Ori: QKJ60467.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4715296-4715740 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 471 5296-471 5740 bp Feature: gene Location: 4715873-4716406 bp Ori: QKJ60468.1 Feature: domain Description: FimA Location: 4715912-4716404 bp Feature: domain Description: FimA Location: 471 591 2-471 6404 bp Feature: gene Location: 4716422-4716913 bp Ori: QKJ61540.1 Feature: domain Description: PRK15287 Location: 4716428-4716911 bp Feature: domain Description: PRK1 5287 Location: 471 6428-471 691 1 bp Feature: gene Location: 5048697-5049414 bp Feature: domain Description: Autoind_bind Location: 5048733-5049153 bp Feature: domain Description: Autoind_bind Location: 5048733-50491 53 bp Feature: gene Location: 5049797-5050245 bp Feature: gene Location: 5051410-5052090 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5051440-5051881 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5051 440-5051 881 bp Feature: gene Location: 5053137-5054132 bp Ori: QKJ60698.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5053482-5053923 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5053482-5053923 bp Feature: gene Location: 5054125-5054658 bp Ori: QKJ60699.1 Feature: domain Description: FimA Location: 5054170-5054656 bp Feature: domain Description: FimA Location: 50541 70-5054656 bp Feature: gene Location: 5054655-5055140 bp Ori: QKJ60700.1 Feature: domain Description: PRK15287 Location: 5054682-5055138 bp Feature: domain Description: PRK1 5287 Location: 5054682-50551 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, ghrA (PRK15469), STAS_anti-anti-sigma_factors (cd07043), RVT-GII, PRK09290 (allantoate amidohydrolase; Reviewed), PucG (COG0075), RVT-UG4, FimA (pfam16970)
PRK15287 (fimbrial minor subunit StfF), Autoind_bind (pfam03472)