myRT

myRT report for GCA_013305305.1_ASM1330530v1

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Seq: CP054268.1 Klebsiella pneumoniae strain 39427 chromosome, complete genome (5414156 bp)
Overview 1 RT 1: 1848596-1855067 bp 2 RT 2: 3066132-3071943 bp 3 RT 3: 3252407-3257771 bp 4 RT 4: 3594752-3599701 bp 5 RT 5: 4038758-4041853 bp Neighborhood of RT #1 [1848596, 1855081] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [3066132, 3071999] umuC PRK10276 RVT-GII PinE Rve Neighborhood of RT #3 [3252407, 3257824] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #4 [3594752, 3599721] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Neighborhood of RT #5 [4038758, 4041909] PRK10276 PRK10276 RVT-GII Laminin_G_3 Feature: gene Location: 1848596-1850020 bp Ori: QKK63636.1 Gene: sbcB Feature: domain Description: SbcB Location: 1848602-1850018 bp Feature: domain Description: SbcB Location: 1 848602-1 85001 8 bp Feature: gene Location: 1850201-1851364 bp Ori: QKK63637.1 Gene: dacD Feature: domain Description: dacD Location: 1850204-1851359 bp Feature: domain Description: dacD Location: 1 850204-1 851 359 bp Feature: gene Location: 1851882-1853369 bp Ori: QKK63638.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1852287-1852977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 852287-1 852977 bp Feature: gene Location: 1853451-1853924 bp Ori: QKK63639.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1853454-1853913 bp Feature: domain Description: PRK1 001 6 Location: 1 853454-1 85391 3 bp Feature: gene Location: 1854023-1855081 bp Ori: QKK63640.1 Feature: domain Description: YccC Location: 1854029-1855067 bp Feature: domain Description: YccC Location: 1 854029-1 855067 bp Feature: gene Location: 3066132-3067397 bp Ori: QKK64770.1 Feature: domain Description: umuC Location: 3066135-3067395 bp Feature: domain Description: umuC Location: 30661 35-3067395 bp Feature: gene Location: 3067399-3067818 bp Ori: QKK67009.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3067402-3067813 bp Feature: domain Description: PRK1 0276 Location: 3067402-306781 3 bp Feature: gene Location: 3067898-3069385 bp Ori: QKK64771.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3068303-3068993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3068303-3068993 bp Feature: gene Location: 3070780-3071241 bp Feature: domain Description: PinE Location: 3070783-3071233 bp Feature: domain Description: PinE Location: 3070783-3071 233 bp Feature: gene Location: 3071295-3071999 bp Ori: QKK64772.1 Feature: domain Description: Rve Location: 3071298-3071943 bp Feature: domain Description: Rve Location: 3071 298-3071 943 bp Feature: gene Location: 3252407-3253672 bp Ori: QKK64951.1 Feature: domain Description: umuC Location: 3252410-3253670 bp Feature: domain Description: umuC Location: 325241 0-3253670 bp Feature: gene Location: 3253675-3254094 bp Ori: QKK64952.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3253678-3254089 bp Feature: domain Description: PRK1 0276 Location: 3253678-3254089 bp Feature: gene Location: 3254173-3255660 bp Ori: QKK64953.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3254578-3255268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3254578-3255268 bp Feature: gene Location: 3256275-3256517 bp Ori: QKK64954.1 Feature: domain Description: DinI Location: 3256326-3256506 bp Feature: domain Description: DinI Location: 3256326-3256506 bp Feature: gene Location: 3256688-3257824 bp Ori: QKK67019.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3256868-3257771 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3256868-3257771 bp Feature: gene Location: 3594752-3595630 bp Ori: QKK67036.1 Feature: domain Description: Phage_CI_repr Location: 3594779-3594962 bp Feature: domain Description: Phage_CI_repr Location: 3594779-3594962 bp Feature: domain Description: Phage_CI_repr Location: 3595091-3595283 bp Feature: domain Description: Phage_CI_repr Location: 3595091 -3595283 bp Feature: domain Description: Phage_CI_C Location: 3595310-3595604 bp Feature: domain Description: Phage_CI_C Location: 359531 0-3595604 bp Feature: gene Location: 3595642-3596586 bp Feature: gene Location: 3596685-3597715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3596997-3597153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3596997-35971 53 bp Feature: gene Location: 3598055-3599035 bp Ori: QKK67037.1 Feature: domain Description: int Location: 3598058-3598985 bp Feature: domain Description: int Location: 3598058-3598985 bp Feature: gene Location: 3599158-3599721 bp Ori: QKK65265.1 Feature: domain Description: YbjK Location: 3599164-3599701 bp Feature: domain Description: YbjK Location: 35991 64-3599701 bp Feature: gene Location: 4038758-4039075 bp Ori: QKK65640.1 Feature: domain Description: PRK10276 Location: 4038764-4038878 bp Feature: domain Description: PRK1 0276 Location: 4038764-4038878 bp Feature: domain Description: PRK10276 Location: 4038905-4038974 bp Feature: domain Description: PRK1 0276 Location: 4038905-4038974 bp Feature: gene Location: 4039075-4039314 bp Feature: gene Location: 4039392-4040879 bp Ori: QKK65642.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4039797-4040487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4039797-4040487 bp Feature: gene Location: 4041329-4041538 bp Feature: gene Location: 4041535-4041909 bp Ori: QKK67058.1 Feature: domain Description: Laminin_G_3 Location: 4041556-4041853 bp Feature: domain Description: Laminin_G_3 Location: 4041 556-4041 853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961), Rve (COG3316), DinI (pfam06183)
GT9_LPS_heptosyltransferase (cd03789), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), YbjK (COG3226), Laminin_G_3 (pfam13385)