myRT

myRT report for GCA_013305625.1_ASM1330562v1

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Seq: CP045551.1 Pseudomonas putida strain 15420352 chromosome, complete genome (6165619 bp)
Overview 1 RT 1: 483616-490141 bp 2 RT 2: 3285615-3287614 bp 3 RT 3: 4961898-4966945 bp 4 RT 4: 4985003-4988786 bp Neighborhood of RT #1 [483616, 490158] CysE HTH_XRE RVT-Retrons pqqA PQQ_membr_DH Neighborhood of RT #2 [3285615, 3287706] Tsi6 RVT-GII Ntox46 Neighborhood of RT #3 [4961898, 4966945] umuC RVT-Retrons COG1669 Neighborhood of RT #4 [4985003, 4988785] IS5 RVT-GII GIIM IS5 Feature: gene Location: 483616-484170 bp Ori: QKL05319.1 Feature: domain Description: CysE Location: 483730-484126 bp Feature: domain Description: CysE Location: 483730-4841 26 bp Feature: gene Location: 485518-485829 bp Ori: QKL05320.1 Feature: domain Description: HTH_XRE Location: 485533-485692 bp Feature: domain Description: HTH_XRE Location: 485533-485692 bp Feature: gene Location: 485801-486748 bp Ori: QKL05321.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 485996-486527 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 485996-486527 bp Feature: gene Location: 487097-487168 bp Ori: QKL10291.1 Gene: pqqA Feature: domain Description: pqqA Location: 487100-487166 bp Feature: domain Description: pqqA Location: 4871 00-4871 66 bp Feature: gene Location: 487780-490158 bp Ori: QKL10292.1 Feature: domain Description: PQQ_membr_DH Location: 487840-490141 bp Feature: domain Description: PQQ_membr_DH Location: 487840-4901 41 bp Feature: gene Location: 3285615-3285911 bp Ori: QKL07820.1 Feature: domain Description: Tsi6 Location: 3285630-3285876 bp Feature: domain Description: Tsi6 Location: 3285630-3285876 bp Feature: gene Location: 3286001-3286426 bp Feature: gene Location: 3286372-3286761 bp Ori: QKL07822.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3286381-3286594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3286381 -3286594 bp Feature: gene Location: 3287171-3287482 bp Feature: gene Location: 3287509-3287706 bp Ori: QKL07824.1 Feature: domain Description: Ntox46 Location: 3287533-3287614 bp Feature: domain Description: Ntox46 Location: 3287533-328761 4 bp Feature: gene Location: 4961898-4963727 bp Feature: gene Location: 4963799-4964200 bp Feature: domain Description: umuC Location: 4963817-4964186 bp Feature: domain Description: umuC Location: 496381 7-49641 86 bp Feature: gene Location: 4964477-4966273 bp Ori: QKL09253.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4964606-4965233 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4964606-4965233 bp Feature: gene Location: 4966453-4966755 bp Ori: QKL09254.1 Feature: domain Description: COG1669 Location: 4966459-4966750 bp Feature: domain Description: COG1 669 Location: 4966459-4966750 bp Feature: gene Location: 4966745-4966945 bp Feature: gene Location: 4985003-4985923 bp Feature: gene Location: 4985951-4986421 bp Feature: domain Description: IS5 Location: 4985957-4986398 bp Feature: domain Description: IS5 Location: 4985957-4986398 bp Feature: gene Location: 4986495-4987748 bp Ori: QKL09279.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4986708-4987365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4986708-4987365 bp Feature: domain Description: GIIM Note: maturase Location: 4987443-4987665 bp Feature: domain Description: GIIM Note: maturase Location: 4987443-4987665 bp Feature: gene Location: 4988139-4988237 bp Feature: gene Location: 4988270-4988785 bp Feature: domain Description: IS5 Location: 4988456-4988786 bp Feature: domain Description: IS5 Location: 4988456-4988786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CysE (COG1045), HTH_XRE (smart00530), RVT-Retrons, pqqA (PRK00284), PQQ_membr_DH (TIGR03074), Tsi6 (pfam18660), RVT-GII, Ntox46 (pfam15538), umuC (PRK03609), COG1669 (Predicted nucleotidyltransferase )
IS5 (COG3039), GIIM (pfam08388)