myRT

myRT report for GCA_013305705.1_ASM1330570v1

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Seq: CP046396.1 Escherichia coli strain ampC_0069 chromosome, complete genome (5056572 bp)
Overview 1 RT 1: 96319-100198 bp 2 RT 2: 876636-883093 bp 3 RT 3: 906224-909753 bp 4 RT 4: 2097978-2103239 bp 5 RT 5: 3489002-3492493 bp 6 RT 6: 3959816-3963990 bp Neighborhood of RT #1 [96319, 100203] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [876636, 883119] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Neighborhood of RT #3 [906224, 909806] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [2097978, 2103247] InsE PHA02517 RVT-GII GIIM PHA02517 HsdM Neighborhood of RT #5 [3489002, 3492896] AlpA PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [3959816, 3964004] InsE RVT-GII GIIM PHA02517 VI_effect_Hcp1 Feature: gene Location: 96319-97035 bp Ori: QKL27667.1 Feature: domain Description: rph Location: 96322-97030 bp Feature: domain Description: rph Location: 96322-97030 bp Feature: gene Location: 97101-97742 bp Ori: QKL27668.1 Gene: pyrE Feature: domain Description: pyrE Location: 97104-97737 bp Feature: domain Description: pyrE Location: 971 04-97737 bp Feature: gene Location: 98040-98999 bp Ori: QKL27669.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 98175-98724 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 981 75-98724 bp Feature: gene Location: 99045-99641 bp Ori: QKL27670.1 Gene: slmA Feature: domain Description: slmA Location: 99051-99627 bp Feature: domain Description: slmA Location: 99051 -99627 bp Feature: gene Location: 99748-100203 bp Ori: QKL32013.1 Feature: domain Description: dut Location: 99751-100198 bp Feature: domain Description: dut Location: 99751 -1 001 98 bp Feature: gene Location: 876636-877691 bp Ori: QKL28365.1 Feature: domain Description: YesN Location: 876639-877038 bp Feature: domain Description: YesN Location: 876639-877038 bp Feature: domain Description: YesN Location: 877371-877668 bp Feature: domain Description: YesN Location: 877371 -877668 bp Feature: gene Location: 877708-878937 bp Ori: QKL28366.1 Feature: domain Description: YesM Location: 878188-878929 bp Feature: domain Description: YesM Location: 8781 88-878929 bp Feature: gene Location: 879586-880107 bp Ori: QKL28367.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879592-879874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879592-879874 bp Feature: domain Description: GIIM Note: maturase Location: 879922-880102 bp Feature: domain Description: GIIM Note: maturase Location: 879922-8801 02 bp Feature: gene Location: 880283-880674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880613-880673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88061 3-880673 bp Feature: gene Location: 881160-882065 bp Feature: gene Location: 882202-883119 bp Ori: QKL28369.1 Feature: domain Description: PFLE_PFLC Location: 882238-883093 bp Feature: domain Description: PFLE_PFLC Location: 882238-883093 bp Feature: gene Location: 906224-906607 bp Feature: domain Description: PHA02517 Location: 906254-906608 bp Feature: domain Description: PHA0251 7 Location: 906254-906608 bp Feature: gene Location: 906600-906971 bp Feature: gene Location: 907280-908788 bp Ori: QKL32042.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 907538-908270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 907538-908270 bp Feature: domain Description: GIIM Note: maturase Location: 908345-908543 bp Feature: domain Description: GIIM Note: maturase Location: 908345-908543 bp Feature: gene Location: 908878-909351 bp Feature: domain Description: PHA02517 Location: 908884-909349 bp Feature: domain Description: PHA0251 7 Location: 908884-909349 bp Feature: gene Location: 909456-909806 bp Ori: QKL28390.1 Feature: domain Description: InsE Location: 909465-909753 bp Feature: domain Description: InsE Location: 909465-909753 bp Feature: gene Location: 2097978-2098622 bp Feature: domain Description: InsE Location: 2098017-2098308 bp Feature: domain Description: InsE Location: 209801 7-2098308 bp Feature: domain Description: PHA02517 Location: 2098524-2098623 bp Feature: domain Description: PHA0251 7 Location: 2098524-2098623 bp Feature: gene Location: 2098615-2098986 bp Feature: gene Location: 2099295-2100803 bp Ori: QKL32084.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2099553-2100285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2099553-21 00285 bp Feature: domain Description: GIIM Note: maturase Location: 2100360-2100558 bp Feature: domain Description: GIIM Note: maturase Location: 21 00360-21 00558 bp Feature: gene Location: 2100884-2101372 bp Feature: domain Description: PHA02517 Location: 2100887-2101337 bp Feature: domain Description: PHA0251 7 Location: 21 00887-21 01 337 bp Feature: gene Location: 2101724-2103247 bp Ori: QKL29396.1 Feature: domain Description: HsdM Location: 2101745-2103239 bp Feature: domain Description: HsdM Location: 21 01 745-21 03239 bp Feature: gene Location: 3489002-3489199 bp Ori: QKL30648.1 Feature: domain Description: AlpA Location: 3489008-3489191 bp Feature: domain Description: AlpA Location: 3489008-34891 91 bp Feature: gene Location: 3489413-3489901 bp Feature: domain Description: PHA02517 Location: 3489416-3489866 bp Feature: domain Description: PHA0251 7 Location: 348941 6-3489866 bp Feature: gene Location: 3489982-3491490 bp Ori: QKL32147.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3490240-3490972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3490240-3490972 bp Feature: domain Description: GIIM Note: maturase Location: 3491047-3491245 bp Feature: domain Description: GIIM Note: maturase Location: 3491 047-3491 245 bp Feature: gene Location: 3491799-3492170 bp Feature: gene Location: 3492163-3492896 bp Feature: domain Description: InsE Location: 3492202-3492493 bp Feature: domain Description: InsE Location: 3492202-3492493 bp Feature: gene Location: 3959816-3960549 bp Feature: domain Description: InsE Location: 3959855-3960146 bp Feature: domain Description: InsE Location: 3959855-39601 46 bp Feature: gene Location: 3960542-3960913 bp Feature: gene Location: 3961222-3962730 bp Ori: QKL32169.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3961480-3962212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3961 480-396221 2 bp Feature: domain Description: GIIM Note: maturase Location: 3962287-3962485 bp Feature: domain Description: GIIM Note: maturase Location: 3962287-3962485 bp Feature: gene Location: 3962811-3963299 bp Feature: domain Description: PHA02517 Location: 3962814-3963264 bp Feature: domain Description: PHA0251 7 Location: 396281 4-3963264 bp Feature: gene Location: 3963486-3964004 bp Ori: QKL31070.1 Gene: hcp Feature: domain Description: VI_effect_Hcp1 Location: 3963495-3963990 bp Feature: domain Description: VI_effect_Hcp1 Location: 3963495-3963990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)
PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), HsdM (COG0286), AlpA (COG3311), VI_effect_Hcp1 (TIGR03344)