myRT

myRT report for GCA_013315835.1_ASM1331583v1

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Seq: CP054314.1 Escherichia coli strain SCU-483 chromosome, complete genome (4915532 bp)
Overview 1 RT 1: 1678839-1685576 bp Neighborhood of RT #1 [1678839, 1685668] PRK11462 PRK09692 RVT-Retrons Psu PRK09678 PRK09678 Feature: gene Location: 1678839-1680221 bp Ori: QKN26018.1 Feature: domain Description: PRK11462 Location: 1678842-1680219 bp Feature: domain Description: PRK1 1 462 Location: 1 678842-1 68021 9 bp Feature: gene Location: 1680772-1681941 bp Ori: QKN26019.1 Feature: domain Description: PRK09692 Location: 1680781-1681936 bp Feature: domain Description: PRK09692 Location: 1 680781 -1 681 936 bp Feature: gene Location: 1682819-1684302 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1683755-1684010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 683755-1 68401 0 bp Feature: gene Location: 1684522-1685094 bp Ori: QKN26020.1 Feature: domain Description: Psu Location: 1684540-1685077 bp Feature: domain Description: Psu Location: 1 684540-1 685077 bp Feature: gene Location: 1685168-1685668 bp Ori: QKN26021.1 Feature: domain Description: PRK09678 Location: 1685171-1685303 bp Feature: domain Description: PRK09678 Location: 1 6851 71 -1 685303 bp Feature: domain Description: PRK09678 Location: 1685426-1685576 bp Feature: domain Description: PRK09678 Location: 1 685426-1 685576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11462 (putative transporter; Provisional), PRK09692 (Integrase; provisional), RVT-Retrons, Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: CP054315.1 Escherichia coli strain SCU-483 plasmid pSCU-483-2 (79770 bp)
Overview 1 RT 1: 29740-34090 bp Neighborhood of RT #1 [29740, 34372] RVT_N RVT-GII GIIM HNHc ArdA DUF1472 Feature: gene Location: 29740-30006 bp Feature: gene Location: 30097-30273 bp Feature: gene Location: 31595-33262 bp Ori: QKN28481.1 Gene: ltrA Feature: domain Description: RVT_N Location: 31643-31880 bp Feature: domain Description: RVT_N Location: 31643-31880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31931-32567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31931-32 567 bp Feature: domain Description: GIIM Note: maturase Location: 32624-32858 bp Feature: domain Description: GIIM Note: maturase Location: 32 62 4-32 858 bp Feature: domain Description: HNHc Note: nucleases Location: 33068-33227 bp Feature: domain Description: HNHc Note: nucleases Location: 33068-332 2 7 bp Feature: gene Location: 33516-34016 bp Ori: QKN28482.1 Feature: domain Description: ArdA Location: 33531-34008 bp Feature: domain Description: ArdA Location: 33531-34008 bp Feature: gene Location: 33937-34372 bp Feature: domain Description: DUF1472 Location: 34018-34090 bp Feature: domain Description: DUF1472 Location: 34018-34090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), ArdA (pfam07275), DUF1472 (pfam07339)