myRT

myRT report for GCA_013315935.1_ASM1331593v1

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Seq: CP054335.1 Escherichia coli strain SCU-120 chromosome, complete genome (5196142 bp)
Overview 1 RT 1: 6-4042 bp 2 RT 2: 125121-129736 bp 3 RT 3: 138316-142953 bp 4 RT 4: 1288900-1294308 bp 5 RT 5: 2069966-2073848 bp 6 RT 6: 2922175-2925981 bp 7 RT 7: 3322887-3326650 bp Neighborhood of RT #1 [6, 4042] PHA02517 RVT-GII GIIM InsE PHA02517 Neighborhood of RT #2 [125121, 129750] DcuC RVT-GII RVT-GII Asparaginase_2 DUF5339 Neighborhood of RT #3 [138316, 142964] FadR PHA02517 RVT-GII GIIM RVT-GII InsE TnpB_IS66 Neighborhood of RT #4 [1288900, 1294331] RVT-GII GIIM PocR His_kinase YesN YesN Neighborhood of RT #5 [2069966, 2073853] dut slmA RVT-Retrons pyrE rph Neighborhood of RT #6 [2922175, 2925981] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #7 [3322887, 3327077] VI_effect_Hcp1 PHA02517 RVT-GII GIIM InsE Feature: gene Location: 6-458 bp Feature: domain Description: PHA02517 Location: 9-459 bp Feature: domain Description: PHA0251 7 Location: 9-459 bp Feature: gene Location: 539-2047 bp Ori: QKN47188.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 797-1529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 797-1 529 bp Feature: domain Description: GIIM Note: maturase Location: 1604-1802 bp Feature: domain Description: GIIM Note: maturase Location: 1 604-1 802 bp Feature: gene Location: 2720-3364 bp Feature: domain Description: InsE Location: 2759-3050 bp Feature: domain Description: InsE Location: 2759-3050 bp Feature: domain Description: PHA02517 Location: 3266-3365 bp Feature: domain Description: PHA0251 7 Location: 3266-3365 bp Feature: gene Location: 3440-4042 bp Feature: gene Location: 125121-126483 bp Gene: dcuC Feature: domain Description: DcuC Location: 125124-125520 bp Feature: domain Description: DcuC Location: 1 251 24-1 25520 bp Feature: gene Location: 126536-126763 bp Feature: gene Location: 127129-127575 bp Ori: QKN43506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127435-127537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27435-1 27537 bp Feature: gene Location: 127527-127691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127530-127686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27530-1 27686 bp Feature: gene Location: 128104-129134 bp Feature: domain Description: Asparaginase_2 Location: 128194-128491 bp Feature: domain Description: Asparaginase_2 Location: 1 281 94-1 28491 bp Feature: gene Location: 129472-129750 bp Ori: QKN43507.1 Feature: domain Description: DUF5339 Location: 129535-129736 bp Feature: domain Description: DUF5339 Location: 1 29535-1 29736 bp Feature: gene Location: 138316-138450 bp Ori: QKN43510.1 Feature: domain Description: FadR Location: 138331-138433 bp Feature: domain Description: FadR Location: 1 38331 -1 38433 bp Feature: gene Location: 138670-139158 bp Feature: domain Description: PHA02517 Location: 138673-139129 bp Feature: domain Description: PHA0251 7 Location: 1 38673-1 391 29 bp Feature: gene Location: 139239-140279 bp Ori: QKN43511.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139242-139761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 39242-1 39761 bp Feature: domain Description: GIIM Note: maturase Location: 139836-140034 bp Feature: domain Description: GIIM Note: maturase Location: 1 39836-1 40034 bp Feature: gene Location: 140272-140748 bp Ori: QKN47199.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140530-140713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40530-1 4071 3 bp Feature: gene Location: 141421-142154 bp Feature: domain Description: InsE Location: 141460-141754 bp Feature: domain Description: InsE Location: 1 41 460-1 41 754 bp Feature: gene Location: 142665-142964 bp Ori: QKN43512.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 142692-142953 bp Feature: domain Description: TnpB_IS66 Location: 1 42692-1 42953 bp Feature: gene Location: 1288900-1289805 bp Feature: gene Location: 1290291-1290681 bp Feature: gene Location: 1290857-1291378 bp Ori: QKN44317.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1290863-1291145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 290863-1 291 1 45 bp Feature: domain Description: GIIM Note: maturase Location: 1291193-1291373 bp Feature: domain Description: GIIM Note: maturase Location: 1 291 1 93-1 291 373 bp Feature: gene Location: 1292032-1293259 bp Feature: domain Description: PocR Location: 1292059-1292545 bp Feature: domain Description: PocR Location: 1 292059-1 292545 bp Feature: domain Description: His_kinase Location: 1292644-1292794 bp Feature: domain Description: His_kinase Location: 1 292644-1 292794 bp Feature: gene Location: 1293276-1294331 bp Ori: QKN44318.1 Feature: domain Description: YesN Location: 1293279-1293678 bp Feature: domain Description: YesN Location: 1 293279-1 293678 bp Feature: domain Description: YesN Location: 1294011-1294308 bp Feature: domain Description: YesN Location: 1 29401 1 -1 294308 bp Feature: gene Location: 2069966-2070424 bp Ori: QKN44907.1 Gene: dut Feature: domain Description: dut Location: 2069972-2070419 bp Feature: domain Description: dut Location: 2069972-207041 9 bp Feature: gene Location: 2070531-2071127 bp Ori: QKN44908.1 Gene: slmA Feature: domain Description: slmA Location: 2070537-2071113 bp Feature: domain Description: slmA Location: 2070537-2071 1 1 3 bp Feature: gene Location: 2071173-2072132 bp Ori: QKN44909.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2071308-2071857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2071 308-2071 857 bp Feature: gene Location: 2072430-2073071 bp Ori: QKN44910.1 Gene: pyrE Feature: domain Description: pyrE Location: 2072433-2073066 bp Feature: domain Description: pyrE Location: 2072433-2073066 bp Feature: gene Location: 2073137-2073853 bp Ori: QKN44911.1 Gene: rph Feature: domain Description: rph Location: 2073140-2073848 bp Feature: domain Description: rph Location: 20731 40-2073848 bp Feature: gene Location: 2922175-2922893 bp Feature: domain Description: InsE Location: 2922214-2922433 bp Feature: domain Description: InsE Location: 292221 4-2922433 bp Feature: gene Location: 2923260-2923526 bp Feature: gene Location: 2923565-2925073 bp Ori: QKN47297.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2923823-2924555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2923823-2924555 bp Feature: domain Description: GIIM Note: maturase Location: 2924630-2924828 bp Feature: domain Description: GIIM Note: maturase Location: 2924630-2924828 bp Feature: gene Location: 2925154-2925641 bp Feature: domain Description: PHA02517 Location: 2925157-2925328 bp Feature: domain Description: PHA0251 7 Location: 29251 57-2925328 bp Feature: gene Location: 2925724-2925981 bp Feature: gene Location: 3322887-3323405 bp Ori: QKN45762.1 Feature: domain Description: VI_effect_Hcp1 Location: 3322896-3323391 bp Feature: domain Description: VI_effect_Hcp1 Location: 3322896-3323391 bp Feature: gene Location: 3323592-3324083 bp Feature: domain Description: PHA02517 Location: 3323595-3324048 bp Feature: domain Description: PHA0251 7 Location: 3323595-3324048 bp Feature: gene Location: 3324164-3325672 bp Ori: QKN47314.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3324422-3325154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3324422-33251 54 bp Feature: domain Description: GIIM Note: maturase Location: 3325229-3325427 bp Feature: domain Description: GIIM Note: maturase Location: 3325229-3325427 bp Feature: gene Location: 3325711-3325977 bp Feature: gene Location: 3326344-3327077 bp Feature: domain Description: InsE Location: 3326383-3326650 bp Feature: domain Description: InsE Location: 3326383-3326650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), DcuC (TIGR00771), Asparaginase_2 (pfam01112), DUF5339 (pfam17274), FadR (COG2186), TnpB_IS66 (pfam05717), PocR (pfam10114)
His_kinase (pfam06580), YesN (COG4753), dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), VI_effect_Hcp1 (TIGR03344)

Seq: CP054336.1 Escherichia coli strain SCU-120 plasmid pSCU-120-1, complete sequence (142873 bp)
Overview 1 RT 1: 101390-105618 bp Neighborhood of RT #1 [101390, 105618] DUF905 PRK13732 RVT-GII Feature: gene Location: 101390-101623 bp Ori: QKN47489.1 Feature: domain Description: DUF905 Location: 101420-101618 bp Feature: domain Description: DUF905 Location: 10142 0-101618 bp Feature: gene Location: 101691-102188 bp Ori: QKN47524.1 Gene: ssb Feature: domain Description: PRK13732 Location: 101694-102186 bp Feature: domain Description: PRK13732 Location: 101694-102 186 bp Feature: gene Location: 102338-104238 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102605-103070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 605-103070 bp Feature: gene Location: 105122-105310 bp Feature: gene Location: 105361-105618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII