myRT

myRT report for GCA_013317085.1_ASM1331708v1

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Seq: CP047405.1 Escherichia coli strain MS6193 chromosome, complete genome (4922872 bp)
Overview 1 RT 1: 338574-344223 bp 2 RT 2: 4886943-4891796 bp Neighborhood of RT #1 [338574, 344306] InsE PHA02517 RVT-GII RVT-GII GIIM fruct_sucro_rep scrB_fam Neighborhood of RT #2 [4886943, 4891796] Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 338574-338858 bp Ori: QKN71902.1 Gene: ykgN_1 Feature: domain Description: InsE Location: 338589-338847 bp Feature: domain Description: InsE Location: 338589-338847 bp Feature: gene Location: 338900-339325 bp Ori: QKN71903.1 Gene: insO-1 Feature: domain Description: PHA02517 Location: 338921-339260 bp Feature: domain Description: PHA0251 7 Location: 338921 -339260 bp Feature: gene Location: 339917-340873 bp Ori: QKN71904.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340190-340826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3401 90-340826 bp Feature: gene Location: 340833-341438 bp Ori: QKN71905.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340848-340920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340848-340920 bp Feature: domain Description: GIIM Note: maturase Location: 340995-341214 bp Feature: domain Description: GIIM Note: maturase Location: 340995-341 21 4 bp Feature: gene Location: 341872-342876 bp Ori: QKN71906.1 Gene: cra_2 Feature: domain Description: fruct_sucro_rep Location: 341893-342871 bp Feature: domain Description: fruct_sucro_rep Location: 341 893-342871 bp Feature: gene Location: 342906-344306 bp Ori: QKN71907.1 Gene: scrB Feature: domain Description: scrB_fam Location: 342951-344223 bp Feature: domain Description: scrB_fam Location: 342951 -344223 bp Feature: gene Location: 4886943-4888736 bp Ori: QKN76152.1 Gene: stfR_3 Feature: domain Description: Phage_fiber_2 Location: 4886964-4887078 bp Feature: domain Description: Phage_fiber_2 Location: 4886964-4887078 bp Feature: domain Description: Collar Location: 4888056-4888194 bp Feature: domain Description: Collar Location: 4888056-48881 94 bp Feature: domain Description: Phage_fiber Location: 4888245-4888284 bp Feature: domain Description: Phage_fiber Location: 4888245-4888284 bp Feature: domain Description: Phage_fiber Location: 4888341-4888380 bp Feature: domain Description: Phage_fiber Location: 4888341 -4888380 bp Feature: domain Description: Phage_fiber Location: 4888539-4888578 bp Feature: domain Description: Phage_fiber Location: 4888539-4888578 bp Feature: domain Description: Phage_fiber Location: 4888584-4888614 bp Feature: domain Description: Phage_fiber Location: 4888584-488861 4 bp Feature: gene Location: 4888736-4889320 bp Ori: QKN76153.1 Gene: tfaQ_5 Feature: domain Description: Caudo_TAP Location: 4888952-4889309 bp Feature: domain Description: Caudo_TAP Location: 4888952-4889309 bp Feature: gene Location: 4889433-4890803 bp Ori: QKN76154.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4889661-4890267 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4889661 -4890267 bp Feature: gene Location: 4890781-4891332 bp Ori: QKN76155.1 Feature: domain Description: SLATT_5 Location: 4890790-4891303 bp Feature: domain Description: SLATT_5 Location: 4890790-4891 303 bp Feature: gene Location: 4891698-4891796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), fruct_sucro_rep (TIGR02417), scrB_fam (TIGR01322), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413)
RVT-UG17, SLATT_5 (pfam18160)