myRT

myRT report for GCA_013341315.1_ASM1334131v1

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Seq: CP054473.1 Pseudomonas aeruginosa strain PAAK095 chromosome, complete genome (6780782 bp)
Overview 1 RT 1: 294205-299194 bp 2 RT 2: 525144-533981 bp 3 RT 3: 3363373-3370488 bp 4 RT 4: 6290362-6295358 bp Neighborhood of RT #1 [294205, 299196] mono_pep_trsgly RVT_N RVT-GII YkfC HNHc YgdD PRK05659 Neighborhood of RT #2 [525144, 534010] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [3363373, 3370499] PRK10604 OmpR RVT_N RVT-GII GIIM HNH tig clpP Neighborhood of RT #4 [6290362, 6295358] hisH hisB RVT_N RVT-GII YkfC HNHc PanZ Feature: gene Location: 294205-294810 bp Feature: gene Location: 294815-295513 bp Ori: QKP84788.1 Gene: mtgA Feature: domain Description: mono_pep_trsgly Location: 294827-295484 bp Feature: domain Description: mono_pep_trsgly Location: 294827-295484 bp Feature: gene Location: 295672-297405 bp Ori: QKP84789.1 Gene: ltrA Feature: domain Description: RVT_N Location: 295732-295975 bp Feature: domain Description: RVT_N Location: 295732-295975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296023-296671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296023-296671 bp Feature: domain Description: YkfC Location: 296830-297007 bp Feature: domain Description: YkfC Location: 296830-297007 bp Feature: domain Description: HNHc Note: nucleases Location: 297208-297364 bp Feature: domain Description: HNHc Note: nucleases Location: 297208-297364 bp Feature: gene Location: 298516-298893 bp Ori: QKP84790.1 Feature: domain Description: YgdD Location: 298525-298882 bp Feature: domain Description: YgdD Location: 298525-298882 bp Feature: gene Location: 298996-299196 bp Ori: QKP84791.1 Gene: thiS Feature: domain Description: PRK05659 Location: 298999-299194 bp Feature: domain Description: PRK05659 Location: 298999-2991 94 bp Feature: gene Location: 525144-526436 bp Ori: QKP85001.1 Feature: domain Description: PRK10770 Location: 525234-526428 bp Feature: domain Description: PRK1 0770 Location: 525234-526428 bp Feature: gene Location: 526417-529206 bp Ori: QKP85002.1 Feature: domain Description: LptD Location: 526612-529192 bp Feature: domain Description: LptD Location: 52661 2-5291 92 bp Feature: gene Location: 529339-531051 bp Ori: QKP85003.1 Gene: ltrA Feature: domain Description: RVT_N Location: 529396-529639 bp Feature: domain Description: RVT_N Location: 529396-529639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529684-530317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529684-53031 7 bp Feature: domain Description: YkfC Location: 530530-530680 bp Feature: domain Description: YkfC Location: 530530-530680 bp Feature: domain Description: HNH Note: nucleases Location: 530857-530995 bp Feature: domain Description: HNH Note: nucleases Location: 530857-530995 bp Feature: gene Location: 532323-533339 bp Ori: QKP85004.1 Feature: domain Description: COG3178 Location: 532326-533325 bp Feature: domain Description: COG31 78 Location: 532326-533325 bp Feature: gene Location: 533336-534010 bp Ori: QKP85005.1 Feature: domain Description: NTP_transferase_like_1 Location: 533342-533981 bp Feature: domain Description: NTP_transferase_like_1 Location: 533342-533981 bp Feature: gene Location: 3363373-3364659 bp Ori: QKP87540.1 Feature: domain Description: PRK10604 Location: 3363376-3364648 bp Feature: domain Description: PRK1 0604 Location: 3363376-3364648 bp Feature: gene Location: 3364660-3365367 bp Ori: QKP87541.1 Feature: domain Description: OmpR Location: 3364684-3365350 bp Feature: domain Description: OmpR Location: 3364684-3365350 bp Feature: gene Location: 3366621-3368324 bp Ori: QKP87542.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3366678-3366921 bp Feature: domain Description: RVT_N Location: 3366678-3366921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3366966-3367602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3366966-3367602 bp Feature: domain Description: GIIM Note: maturase Location: 3367653-3367887 bp Feature: domain Description: GIIM Note: maturase Location: 3367653-3367887 bp Feature: domain Description: HNH Note: nucleases Location: 3368139-3368277 bp Feature: domain Description: HNH Note: nucleases Location: 33681 39-3368277 bp Feature: gene Location: 3368454-3369764 bp Ori: QKP87543.1 Gene: tig Feature: domain Description: tig Location: 3368457-3369735 bp Feature: domain Description: tig Location: 3368457-3369735 bp Feature: gene Location: 3369858-3370499 bp Ori: QKP87544.1 Gene: clpP Feature: domain Description: clpP Location: 3369912-3370488 bp Feature: domain Description: clpP Location: 336991 2-3370488 bp Feature: gene Location: 6290362-6291000 bp Ori: QKP90009.1 Gene: hisH Feature: domain Description: hisH Location: 6290365-6290989 bp Feature: domain Description: hisH Location: 6290365-6290989 bp Feature: gene Location: 6291000-6291593 bp Ori: QKP90010.1 Gene: hisB Feature: domain Description: hisB Location: 6291009-6291591 bp Feature: domain Description: hisB Location: 6291 009-6291 591 bp Feature: gene Location: 6291768-6293501 bp Ori: QKP90011.1 Gene: ltrA Feature: domain Description: RVT_N Location: 6291828-6292071 bp Feature: domain Description: RVT_N Location: 6291 828-6292071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6292119-6292767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62921 1 9-6292767 bp Feature: domain Description: YkfC Location: 6292926-6293103 bp Feature: domain Description: YkfC Location: 6292926-62931 03 bp Feature: domain Description: HNHc Note: nucleases Location: 6293304-6293460 bp Feature: domain Description: HNHc Note: nucleases Location: 6293304-6293460 bp Feature: gene Location: 6294687-6295085 bp Ori: QKP90012.1 Feature: domain Description: PanZ Location: 6294693-6295059 bp Feature: domain Description: PanZ Location: 6294693-6295059 bp Feature: gene Location: 6295122-6295358 bp Sorry, your browser does not support 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Associated domains:myRT mono_pep_trsgly (TIGR02070), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YgdD (COG2363), PRK05659 (sulfur carrier protein ThiS; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), HNH (pfam01844)
COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), PRK10604 (sensor protein RstB; Provisional), OmpR (COG0745), GIIM (pfam08388), tig (TIGR00115), clpP, hisH (PRK14004), hisB (PRK13598), PanZ