myRT

myRT report for GCA_013343315.1_ASM1334331v1

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Seq: CP050322.1 Pseudomonas aeruginosa strain DVT729 chromosome, complete genome (6546693 bp)
Overview 1 RT 1: 5660365-5669218 bp 2 RT 2: 5685484-5694902 bp Neighborhood of RT #1 [5660365, 5669226] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [5685484, 5694905] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH InsE Feature: gene Location: 5660365-5661039 bp Ori: QKR06013.1 Feature: domain Description: NTP_transferase_like_1 Location: 5660371-5661010 bp Feature: domain Description: NTP_transferase_like_1 Location: 5660371 -5661 01 0 bp Feature: gene Location: 5661036-5662052 bp Ori: QKR06014.1 Feature: domain Description: COG3178 Location: 5661039-5662038 bp Feature: domain Description: COG31 78 Location: 5661 039-5662038 bp Feature: gene Location: 5663325-5665037 bp Ori: QKR06015.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5663382-5663625 bp Feature: domain Description: RVT_N Location: 5663382-5663625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5663670-5664306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5663670-5664306 bp Feature: domain Description: YkfC Location: 5664513-5664666 bp Feature: domain Description: YkfC Location: 566451 3-5664666 bp Feature: domain Description: HNH Note: nucleases Location: 5664843-5664981 bp Feature: domain Description: HNH Note: nucleases Location: 5664843-5664981 bp Feature: gene Location: 5665170-5667953 bp Ori: QKR06016.1 Feature: domain Description: LptD Location: 5665365-5667939 bp Feature: domain Description: LptD Location: 5665365-5667939 bp Feature: gene Location: 5667934-5669226 bp Ori: QKR06017.1 Feature: domain Description: PRK10770 Location: 5668024-5669218 bp Feature: domain Description: PRK1 0770 Location: 5668024-566921 8 bp Feature: gene Location: 5685484-5687337 bp Ori: QKR06035.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 5685496-5687335 bp Feature: domain Description: PRK05658 Location: 5685496-5687335 bp Feature: gene Location: 5687444-5691181 bp Ori: QKR06036.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 5687552-5688209 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5687552-5688209 bp Feature: domain Description: PRK09776 Location: 5688422-5688893 bp Feature: domain Description: PRK09776 Location: 5688422-5688893 bp Feature: domain Description: PAS Location: 5688950-5689475 bp Feature: domain Description: PAS Location: 5688950-5689475 bp Feature: domain Description: PRK10060 Location: 5689484-5691131 bp Feature: domain Description: PRK1 0060 Location: 5689484-5691 1 31 bp Feature: gene Location: 5692262-5693947 bp Ori: QKR06037.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5692319-5692559 bp Feature: domain Description: RVT_N Location: 569231 9-5692559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5692607-5693243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5692607-5693243 bp Feature: domain Description: GIIM Note: maturase Location: 5693297-5693528 bp Feature: domain Description: GIIM Note: maturase Location: 5693297-5693528 bp Feature: domain Description: HNH Note: nucleases Location: 5693780-5693918 bp Feature: domain Description: HNH Note: nucleases Location: 5693780-569391 8 bp Feature: gene Location: 5694249-5694410 bp Feature: gene Location: 5694620-5694905 bp Ori: QKR06039.1 Feature: domain Description: InsE Location: 5694626-5694902 bp Feature: domain Description: InsE Location: 5694626-5694902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), InsE (COG2963)