myRT

myRT report for GCA_013343335.1_ASM1334333v1

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Seq: CP050323.1 Pseudomonas aeruginosa strain DVT429 chromosome, complete genome (6805219 bp)
Overview 1 RT 1: 613793-624099 bp 2 RT 2: 640358-649216 bp 3 RT 3: 3396597-3403712 bp Neighborhood of RT #1 [613793, 624101] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [640358, 649245] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [3396597, 3403723] PRK10604 OmpR RVT_N RVT-GII GIIM HNH tig clpP Feature: gene Location: 613793-614914 bp Ori: QKR07544.1 Feature: domain Description: COG3177 Location: 613811-614903 bp Feature: domain Description: COG31 77 Location: 61 381 1 -61 4903 bp Feature: gene Location: 615173-615310 bp Feature: gene Location: 615638-617323 bp Ori: QKR07546.1 Gene: ltrA Feature: domain Description: RVT_N Location: 615695-615935 bp Feature: domain Description: RVT_N Location: 61 5695-61 5935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 615983-616619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 5983-61 661 9 bp Feature: domain Description: GIIM Note: maturase Location: 616673-616904 bp Feature: domain Description: GIIM Note: maturase Location: 61 6673-61 6904 bp Feature: domain Description: HNH Note: nucleases Location: 617156-617294 bp Feature: domain Description: HNH Note: nucleases Location: 61 71 56-61 7294 bp Feature: gene Location: 618404-622141 bp Ori: QKR07547.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 618512-619169 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61 851 2-61 91 69 bp Feature: domain Description: PRK09776 Location: 619382-619853 bp Feature: domain Description: PRK09776 Location: 61 9382-61 9853 bp Feature: domain Description: PAS Location: 619901-620435 bp Feature: domain Description: PAS Location: 61 9901 -620435 bp Feature: domain Description: PRK10060 Location: 620444-622091 bp Feature: domain Description: PRK1 0060 Location: 620444-622091 bp Feature: gene Location: 622248-624101 bp Ori: QKR07548.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 622260-624099 bp Feature: domain Description: PRK05658 Location: 622260-624099 bp Feature: gene Location: 640358-641650 bp Ori: QKR07566.1 Feature: domain Description: PRK10770 Location: 640448-641642 bp Feature: domain Description: PRK1 0770 Location: 640448-641 642 bp Feature: gene Location: 641631-644441 bp Ori: QKR07567.1 Feature: domain Description: LptD Location: 641826-644427 bp Feature: domain Description: LptD Location: 641 826-644427 bp Feature: gene Location: 644574-646286 bp Ori: QKR07568.1 Gene: ltrA Feature: domain Description: RVT_N Location: 644631-644874 bp Feature: domain Description: RVT_N Location: 644631 -644874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644919-645555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64491 9-645555 bp Feature: domain Description: YkfC Location: 645765-645915 bp Feature: domain Description: YkfC Location: 645765-64591 5 bp Feature: domain Description: HNH Note: nucleases Location: 646092-646230 bp Feature: domain Description: HNH Note: nucleases Location: 646092-646230 bp Feature: gene Location: 647558-648574 bp Ori: QKR07569.1 Feature: domain Description: COG3178 Location: 647561-648560 bp Feature: domain Description: COG31 78 Location: 647561 -648560 bp Feature: gene Location: 648571-649245 bp Ori: QKR07570.1 Feature: domain Description: NTP_transferase_like_1 Location: 648577-649216 bp Feature: domain Description: NTP_transferase_like_1 Location: 648577-64921 6 bp Feature: gene Location: 3396597-3397883 bp Ori: QKR10039.1 Feature: domain Description: PRK10604 Location: 3396600-3397872 bp Feature: domain Description: PRK1 0604 Location: 3396600-3397872 bp Feature: gene Location: 3397884-3398591 bp Ori: QKR10040.1 Feature: domain Description: OmpR Location: 3397908-3398574 bp Feature: domain Description: OmpR Location: 3397908-3398574 bp Feature: gene Location: 3399845-3401548 bp Ori: QKR10041.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3399902-3400145 bp Feature: domain Description: RVT_N Location: 3399902-34001 45 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3400190-3400826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34001 90-3400826 bp Feature: domain Description: GIIM Note: maturase Location: 3400877-3401111 bp Feature: domain Description: GIIM Note: maturase Location: 3400877-3401 1 1 1 bp Feature: domain Description: HNH Note: nucleases Location: 3401363-3401501 bp Feature: domain Description: HNH Note: nucleases Location: 3401 363-3401 501 bp Feature: gene Location: 3401678-3402988 bp Ori: QKR10042.1 Gene: tig Feature: domain Description: tig Location: 3401681-3402959 bp Feature: domain Description: tig Location: 3401 681 -3402959 bp Feature: gene Location: 3403082-3403723 bp Ori: QKR10043.1 Gene: clpP Feature: domain Description: clpP Location: 3403136-3403712 bp Feature: domain Description: clpP Location: 34031 36-340371 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), PRK10604 (sensor protein RstB; Provisional), OmpR (COG0745), tig (TIGR00115), clpP