myRT

myRT report for GCA_013343515.1_ASM1334351v1

Download annotations/find similar RTs

Seq: CP050332.1 Pseudomonas aeruginosa strain DVT413 chromosome, complete genome (6930600 bp)
Overview 1 RT 1: 720688-729538 bp 2 RT 2: 3794304-3801252 bp 3 RT 3: 5144969-5150098 bp Neighborhood of RT #1 [720688, 729567] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #2 [3794304, 3801263] DUF262 COG3472 HATPase_c_3 RVT-Retrons DUF4354 Neighborhood of RT #3 [5144969, 5150145] HTH_ARSR RVT-UG1 DUF3800 Feature: gene Location: 720688-721980 bp Ori: QKR60000.1 Feature: domain Description: PRK10770 Location: 720778-721972 bp Feature: domain Description: PRK1 0770 Location: 720778-721 972 bp Feature: gene Location: 721961-724762 bp Ori: QKR60001.1 Feature: domain Description: LptD Location: 722156-724748 bp Feature: domain Description: LptD Location: 7221 56-724748 bp Feature: gene Location: 724895-726607 bp Ori: QKR60002.1 Gene: ltrA Feature: domain Description: RVT_N Location: 724952-725195 bp Feature: domain Description: RVT_N Location: 724952-7251 95 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 725240-725876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 725240-725876 bp Feature: domain Description: YkfC Location: 726083-726236 bp Feature: domain Description: YkfC Location: 726083-726236 bp Feature: domain Description: HNH Note: nucleases Location: 726413-726551 bp Feature: domain Description: HNH Note: nucleases Location: 72641 3-726551 bp Feature: gene Location: 727880-728896 bp Ori: QKR60003.1 Feature: domain Description: COG3178 Location: 727883-728882 bp Feature: domain Description: COG31 78 Location: 727883-728882 bp Feature: gene Location: 728893-729567 bp Ori: QKR60004.1 Feature: domain Description: NTP_transferase_like_1 Location: 728899-729538 bp Feature: domain Description: NTP_transferase_like_1 Location: 728899-729538 bp Feature: gene Location: 3794304-3795968 bp Ori: QKR62715.1 Feature: domain Description: DUF262 Location: 3794409-3794994 bp Feature: domain Description: DUF262 Location: 3794409-3794994 bp Feature: domain Description: COG3472 Location: 3795126-3795954 bp Feature: domain Description: COG3472 Location: 37951 26-3795954 bp Feature: gene Location: 3796077-3798032 bp Ori: QKR65632.1 Feature: domain Description: HATPase_c_3 Location: 3796146-3796494 bp Feature: domain Description: HATPase_c_3 Location: 37961 46-3796494 bp Feature: gene Location: 3798213-3799166 bp Ori: QKR62716.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3798324-3798918 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3798324-379891 8 bp Feature: gene Location: 3799163-3800110 bp Feature: gene Location: 3800883-3801263 bp Ori: QKR62718.1 Feature: domain Description: DUF4354 Location: 3800886-3801252 bp Feature: domain Description: DUF4354 Location: 3800886-3801 252 bp Feature: gene Location: 5144969-5145499 bp Ori: QKR65678.1 Feature: domain Description: HTH_ARSR Location: 5145083-5145209 bp Feature: domain Description: HTH_ARSR Location: 51 45083-51 45209 bp Feature: gene Location: 5145617-5145901 bp Feature: gene Location: 5145940-5148156 bp Ori: QKR63960.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 5146612-5147149 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 51 4661 2-51 471 49 bp Feature: gene Location: 5148137-5149810 bp Feature: gene Location: 5149807-5150145 bp Ori: QKR63962.1 Feature: domain Description: DUF3800 Location: 5149825-5150098 bp Feature: domain Description: DUF3800 Location: 51 49825-51 50098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), DUF262 (pfam03235), COG3472 (Uncharacterized protein )
HATPase_c_3 (pfam13589), RVT-Retrons, DUF4354 (pfam14263), HTH_ARSR (smart00418), RVT-UG1, DUF3800 (pfam12686)