myRT

myRT report for GCA_013347225.1_ASM1334722v1

Download annotations/find similar RTs

Seq: CP054595.1 Candidatus Accumulibacter sp. isolate SSB1 chromosome, complete genome (5039009 bp)
Overview 1 RT 1: 870572-875659 bp 2 RT 2: 928145-934839 bp 3 RT 3: 1325567-1331354 bp 4 RT 4: 1519409-1524725 bp 5 RT 5: 2772128-2776682 bp 6 RT 6: 3026591-3032979 bp 7 RT 7: 3214123-3224746 bp Neighborhood of RT #1 [870572, 875659] ParB_N_like_MT YhdJ HNH RVT-GII GIIM Neighborhood of RT #2 [928145, 934859] DDE_Tnp_1_4 RVT-GII GIIM InsE RVT-GII DUF2793 Neighborhood of RT #3 [1325567, 1331365] RplQ InsE RVT-GII GIIM flhB flhA Neighborhood of RT #4 [1519409, 1524742] DUF2806 RVT-GII GIIM PanE Neighborhood of RT #5 [2772128, 2776687] TnpB_IS66 COG3436 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Peptidase_S26 Neighborhood of RT #6 [3026591, 3033068] DUF2760 HSP70_NBD RVT-GII GIIM PEP-CTERM Helicase_C_3 Neighborhood of RT #7 [3214123, 3224746] PIN_VapC-like RVT-GII GIIM Pat17_PNPLA8_PNPLA9_like Hypoth_Ymh RVT-GII RVT-GII GIIM Feature: gene Location: 870572-871978 bp Ori: QKS31488.1 Feature: domain Description: ParB_N_like_MT Location: 870596-870845 bp Feature: domain Description: ParB_N_like_MT Location: 870596-870845 bp Feature: domain Description: YhdJ Location: 871058-871943 bp Feature: domain Description: YhdJ Location: 871 058-871 943 bp Feature: gene Location: 872383-872781 bp Ori: QKS31489.1 Feature: domain Description: HNH Note: nucleases Location: 872539-872641 bp Feature: domain Description: HNH Note: nucleases Location: 872539-872641 bp Feature: gene Location: 872975-874213 bp Ori: QKS28153.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873179-873836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8731 79-873836 bp Feature: domain Description: GIIM Note: maturase Location: 873917-874136 bp Feature: domain Description: GIIM Note: maturase Location: 87391 7-8741 36 bp Feature: gene Location: 874643-874823 bp Feature: gene Location: 875114-875659 bp Feature: gene Location: 928145-928612 bp Feature: gene Location: 929171-930817 bp Ori: QKS28199.1 Feature: domain Description: DDE_Tnp_1_4 Location: 929309-930635 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 929309-930635 bp Feature: gene Location: 931080-931697 bp Ori: QKS28200.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931170-931350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 1 70-931 350 bp Feature: domain Description: GIIM Note: maturase Location: 931419-931632 bp Feature: domain Description: GIIM Note: maturase Location: 931 41 9-931 632 bp Feature: gene Location: 931711-932864 bp Feature: domain Description: InsE Location: 931717-932023 bp Feature: domain Description: InsE Location: 931 71 7-932023 bp Feature: gene Location: 933004-933822 bp Ori: QKS28201.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933358-933793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933358-933793 bp Feature: gene Location: 934184-934441 bp Feature: gene Location: 934509-934859 bp Ori: QKS28202.1 Feature: domain Description: DUF2793 Location: 934590-934839 bp Feature: domain Description: DUF2793 Location: 934590-934839 bp Feature: gene Location: 1325567-1325962 bp Ori: QKS28538.1 Gene: rplQ Feature: domain Description: RplQ Location: 1325570-1325915 bp Feature: domain Description: RplQ Location: 1 325570-1 32591 5 bp Feature: gene Location: 1326171-1327324 bp Feature: domain Description: InsE Location: 1326177-1326483 bp Feature: domain Description: InsE Location: 1 3261 77-1 326483 bp Feature: gene Location: 1327385-1327936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1327391-1327514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 327391 -1 32751 4 bp Feature: domain Description: GIIM Note: maturase Location: 1327580-1327778 bp Feature: domain Description: GIIM Note: maturase Location: 1 327580-1 327778 bp Feature: gene Location: 1328149-1329288 bp Ori: QKS28539.1 Gene: flhB Feature: domain Description: flhB Location: 1328152-1329211 bp Feature: domain Description: flhB Location: 1 3281 52-1 32921 1 bp Feature: gene Location: 1329281-1331365 bp Ori: QKS28540.1 Gene: flhA Feature: domain Description: flhA Location: 1329317-1331354 bp Feature: domain Description: flhA Location: 1 32931 7-1 331 354 bp Feature: gene Location: 1519409-1520377 bp Ori: QKS28699.1 Feature: domain Description: DUF2806 Location: 1519712-1520318 bp Feature: domain Description: DUF2806 Location: 1 51 971 2-1 52031 8 bp Feature: gene Location: 1520475-1521230 bp Feature: gene Location: 1521704-1523047 bp Ori: QKS28701.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1522016-1522634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52201 6-1 522634 bp Feature: domain Description: GIIM Note: maturase Location: 1522682-1522907 bp Feature: domain Description: GIIM Note: maturase Location: 1 522682-1 522907 bp Feature: gene Location: 1523140-1523652 bp Feature: gene Location: 1523765-1524742 bp Ori: QKS28703.1 Feature: domain Description: PanE Location: 1523780-1524725 bp Feature: domain Description: PanE Location: 1 523780-1 524725 bp Feature: gene Location: 2772128-2772481 bp Ori: QKS29614.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 2772161-2772449 bp Feature: domain Description: TnpB_IS66 Location: 27721 61 -2772449 bp Feature: gene Location: 2772517-2773746 bp Ori: QKS29615.1 Feature: domain Description: COG3436 Location: 2772892-2773195 bp Feature: domain Description: COG3436 Location: 2772892-27731 95 bp Feature: gene Location: 2773739-2774983 bp Ori: QKS29616.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2773943-2774600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2773943-2774600 bp Feature: domain Description: GIIM Note: maturase Location: 2774681-2774906 bp Feature: domain Description: GIIM Note: maturase Location: 2774681 -2774906 bp Feature: gene Location: 2775033-2775992 bp Ori: QKS29617.1 Feature: domain Description: DDE_Tnp_IS66 Location: 2775054-2775846 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2775054-2775846 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2775867-2775975 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2775867-2775975 bp Feature: gene Location: 2776205-2776687 bp Ori: QKS29618.1 Feature: domain Description: Peptidase_S26 Location: 2776304-2776682 bp Feature: domain Description: Peptidase_S26 Location: 2776304-2776682 bp Feature: gene Location: 3026591-3027163 bp Ori: QKS29807.1 Feature: domain Description: DUF2760 Location: 3026792-3027158 bp Feature: domain Description: DUF2760 Location: 3026792-30271 58 bp Feature: gene Location: 3027160-3029007 bp Ori: QKS29808.1 Feature: domain Description: HSP70_NBD Location: 3027184-3028543 bp Feature: domain Description: HSP70_NBD Location: 30271 84-3028543 bp Feature: gene Location: 3029178-3030548 bp Ori: QKS29809.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3029514-3030126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302951 4-30301 26 bp Feature: domain Description: GIIM Note: maturase Location: 3030186-3030390 bp Feature: domain Description: GIIM Note: maturase Location: 30301 86-3030390 bp Feature: gene Location: 3030997-3031536 bp Ori: QKS31643.1 Feature: domain Description: PEP-CTERM Location: 3031468-3031534 bp Feature: domain Description: PEP-CTERM Location: 3031 468-3031 534 bp Feature: gene Location: 3032151-3033068 bp Feature: domain Description: Helicase_C_3 Location: 3032760-3032979 bp Feature: domain Description: Helicase_C_3 Location: 3032760-3032979 bp Feature: gene Location: 3214123-3214605 bp Ori: QKS29944.1 Feature: domain Description: PIN_VapC-like Location: 3214174-3214516 bp Feature: domain Description: PIN_VapC-like Location: 321 41 74-321 451 6 bp Feature: gene Location: 3214732-3214989 bp Feature: gene Location: 3215166-3216491 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3215460-3216078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 5460-321 6078 bp Feature: domain Description: GIIM Note: maturase Location: 3216126-3216351 bp Feature: domain Description: GIIM Note: maturase Location: 321 61 26-321 6351 bp Feature: gene Location: 3216988-3217704 bp Feature: gene Location: 3217799-3218308 bp Feature: gene Location: 3219347-3220294 bp Ori: QKS29949.1 Feature: domain Description: Pat17_PNPLA8_PNPLA9_like Location: 3219395-3220226 bp Feature: domain Description: Pat1 7_PNPLA8_PNPLA9_like Location: 321 9395-3220226 bp Feature: gene Location: 3220436-3221236 bp Ori: QKS29950.1 Feature: domain Description: Hypoth_Ymh Location: 3220856-3221216 bp Feature: domain Description: Hypoth_Ymh Location: 3220856-3221 21 6 bp Feature: gene Location: 3221345-3222754 bp Ori: QKS29951.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221657-3221789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221 657-3221 789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221855-3222341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221 855-3222341 bp Feature: domain Description: GIIM Note: maturase Location: 3222389-3222614 bp Feature: domain Description: GIIM Note: maturase Location: 3222389-322261 4 bp Feature: gene Location: 3223234-3224139 bp Feature: gene Location: 3224276-3224746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParB_N_like_MT (cd16844), YhdJ (COG0863), HNH (pfam01844), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701), InsE (COG2963), DUF2793 (pfam10983), RplQ (COG0203), flhB (TIGR00328)
flhA (PRK12792), DUF2806 (pfam10987), PanE (COG1893), TnpB_IS66 (pfam05717), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Peptidase_S26 (pfam10502), DUF2760 (pfam10816), HSP70_NBD (cd10170)
PEP-CTERM, Helicase_C_3 (pfam13625), PIN_VapC-like (cd18715), Pat17_PNPLA8_PNPLA9_like (cd07199), Hypoth_Ymh (pfam09509)